Clostridium bornimense: CM240_0838
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Entry
CM240_0838 CDS
T03165
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
clt
Clostridium bornimense
Pathway
clt03420
Nucleotide excision repair
clt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CM240_0838
03430 Mismatch repair
CM240_0838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clt03400
]
CM240_0838
Enzymes [BR:
clt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CM240_0838
DNA repair and recombination proteins [BR:
clt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CM240_0838
MMR (mismatch excision repair)
Other MMR factors
CM240_0838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
SLFN-g3_helicase
AAA_22
ResIII
AAA_30
PhoH
DUF2358
DEAD
AAA_18
Motif
Other DBs
NCBI-ProteinID:
CDM68002
UniProt:
W6S142
LinkDB
All DBs
Position
rep1:937892..939040
Genome browser
AA seq
382 aa
AA seq
DB search
MYNHKGKNKHINNIINIKRDSGVGFMRLNIEQQKLVNSKNVGHQVIRGIAGSGKTTVGVC
RASYLLDNVCDKDDMILFLTYNNSLKTYIKYLYKKTKDELKENQNISFFDNNSDKNIKVS
TIDSIMYGYFKAYCNENGKDLILEMQIKPAIMKQGIYNVRKTFGESSILNENNIKFLRDE
IAWIKACRYITLEKYQNCFRTGRSIGNNDGPSRLNRNSKSREAIFRLMEEVDKLLMKENK
VDIFTANIIALDQIQRYKNHKRYKHIIIDEAQDLTKVQLDFINILRSDKEDSSILFLADV
AQSIYPQAWLVKERSFKTIGYDMTGKGSRLSKNYRTTTEIAEAAYSLLSKDINIVEDENF
VKPSLLDKRGEYPIYTHFNNEE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtataatcacaaaggaaaaaataagcatattaataatataattaatattaagagagat
tcaggggttggttttatgagattaaatatagaacagcaaaaattggtaaatagcaaaaat
gtaggacatcaagttatacgtggaattgctggatcaggtaagacaacagtaggtgtatgt
agagcatcatatcttcttgataacgtttgcgataaagatgatatgattttatttcttacg
tataataattcattaaaaacatacataaagtatttgtacaaaaaaactaaagatgaactt
aaggaaaatcagaatataagtttttttgataataatagtgataagaacataaaggtatct
accatagattctattatgtatggatattttaaagcatattgtaatgaaaacggtaaagat
ttgattttggaaatgcaaataaagccggctattatgaagcaagggatttataatgtaaga
aaaacttttggagaatcatctatattaaatgaaaataatattaagtttttaagagatgaa
attgcttggattaaggcatgtaggtatattacgttggaaaaatatcaaaattgctttaga
actggaagatcaataggtaataatgatggacctagtagattgaatagaaattctaaaagt
agggaagcaatttttagacttatggaagaagttgataaattgcttatgaaagaaaataag
gtagatatatttacagctaatattattgcactagatcagatacaaaggtataaaaatcat
aaaagatataagcatattataattgatgaagctcaagatttaacaaaggtacagcttgat
tttataaatatattaagaagtgataaggaagatagttctatattatttttagctgatgta
gctcaaagtatatatccacaagcatggttagtaaaagaaagatcttttaaaactatagga
tatgatatgacggggaaagggtctaggttatctaaaaattatagaactactacagagata
gcagaggctgcatatagtcttttatcaaaagatattaatatagttgaagatgaaaacttt
gtaaaaccatcattattagataagaggggagaatatcctatatatactcattttaataat
gaagaataa
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