Clostridium bornimense: CM240_0871
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Entry
CM240_0871 CDS
T03165
Name
(GenBank) SMC domain protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
clt
Clostridium bornimense
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clt03400
]
CM240_0871
DNA repair and recombination proteins [BR:
clt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CM240_0871
Archaeal homologous recombinant proteins
CM240_0871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_23
AAA_29
AAA_27
DUF4428
ABC_tran
RNA_helicase
Prim_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
CDM68035
UniProt:
W6SEF9
LinkDB
All DBs
Position
rep1:972056..975547
Genome browser
AA seq
1163 aa
AA seq
DB search
MRPIKLEIKGLNSFIEKQTIDFDKLTKRGLFGIFGPTGSGKSTILDGITLALYGEVSRKS
SNYINTNCDSTSVEFTFQISGADTRRYVVSREFKRKKDGAINSGKCKLIDITDGNEEILA
DKKKLIDEKIKSIIGLGIEDFTRTVVLPQGKFSEFLKLEGKNRRDMLERLFNLQQYGDNL
AFKLSREIAKEKENNSVLLGELKGYEDISKDLLQSKEEALIDINNKLKDAKENLSKIEVI
YKENEELWNLQLDLAGYKEKEILLMHEKDNVEKSKEIVKLGEAALRVLPYIKSYDNTLKE
IEQCQLQLVETKNIIEKITKEREAVEEKWIIAKADNDNKKPELLIRKQKASDALEDKKSL
DNILKRISELKINLNEISEKGKKKKVVFNKLTEELETLEKKEREADESIVVFKIEDELKE
KIQKGIIQRERFDTFKETIDKNNLKIKNISQAIEENTTLKENVSKELEVITKSLEDKIEI
LETLLKSVPGTQDDLLHMQKVLSENKEKWSSFNKISKEIEEGTAKVSTLRRSLDEYSEII
SKEEEALASMKDNLDIMGKEMLAHNLREQLKDGEICPVCGSKDHFKENIKVVKIEGIKEL
EDNIKDKEALLKDYNEKITIVKANITNEEEKLHENNKLLLELGTEFKNISPKEMEENLEK
LKNDIENHIKRKEQLEKEVNISKEEKSNLEKKISNFAVEIENLNKQFIELDKENNITKED
FSEVEKSLNSLVKDTNIEDFKSKWEEIKAIEEKREKLLGEVKKYRSDKDKLSKDKDEITK
SIDDLRAEFIEKRSNIQSLEDNSKEKIESIKSKVGDVEDIDELLVTIEGKVKVIEETYKN
LENEKLLKDKEYTTANESYSSILGKKEQLLHRKGSEEETINEKLREEKFASVDEVRSYEV
SNVKIENLKKEIEEYNDSLLKIKGAIESINEKIGDRSLEEEKWEEIKNSKTSLEEQYKVV
SEDKVRIDEEIKIINTKLKEMEGLLGKKEKLDHKLALLSDLEKLFKGKKFVEFVAAHQLK
YISMEASKRLKEITNGNYGLEVDENGKFIIRDYKNGGAERDATTLSGGETFLASLALALA
LSAQIQLKGTAPLELFFLDEGFGTLDDNLLDVVMSSLEKIHNDKLKIGIISHVEAIKNRV
PMQLVITPAEAGRGGSKVEIVTN
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagaccaattaaacttgaaattaaagggttaaatagttttatcgaaaagcaaacaata
gattttgataagctgactaaaagaggattgtttggtatctttggacctactggtagtggt
aaatctactattcttgatgggataactttagctttatatggagaagtttcaagaaaaagt
tcaaattatataaatacaaattgtgatagcactagcgtagaattcacatttcaaatttca
ggagccgatacgagaaggtatgtcgtttccagagaatttaaaaggaaaaaagatggagct
ataaattctgggaaatgtaaacttattgatataactgatggtaatgaagaaatattagct
gataagaaaaagttaatagatgaaaaaataaaatctataataggcctgggaattgaggat
tttacaagaactgtagtattgccacaaggaaagttcagtgaattcttaaaattagaaggt
aaaaatagaagagatatgttagaaagattatttaatcttcaacaatatggtgacaattta
gcttttaagctatcaagggagattgcaaaggaaaaagaaaataatagtgttctattagga
gagcttaagggttatgaagatataagcaaggatttattacaaagtaaagaagaagcctta
atagatattaataataaattgaaggatgcaaaagaaaacttatcaaagatagaggttatt
tataaggaaaatgaagagttatggaacttgcaattagatttagcagggtataaggaaaaa
gaaatattacttatgcatgaaaaagataatgtagaaaaatctaaagagattgtaaagtta
ggggaagcggcattaagagtattaccttatataaaatcatatgataacactttgaaggaa
atagaacagtgtcagttacagttagttgaaactaagaatattattgaaaaaataacaaaa
gaaagagaagcggtagaagaaaagtggattatagctaaagctgacaatgataataagaag
ccagaattattgataagaaaacaaaaggcatctgatgctttagaagataagaaatctttg
gataatatactaaagagaattagtgaattaaaaattaaccttaatgaaataagtgaaaaa
ggaaagaaaaagaaagttgtttttaataaacttacagaggagttagaaacattagaaaag
aaagaaagagaagctgatgaatctattgtagtttttaaaattgaggatgaattaaaggaa
aaaattcaaaaaggaattatacaaagagagaggttcgatacatttaaggaaactattgat
aagaataatttaaaaataaaaaatatatcacaggctatagaggaaaatactactttaaaa
gaaaatgtatctaaggaattagaagttataacaaaatcattagaagataaaatagaaatt
ctagaaactcttttgaaatctgtaccggggactcaagatgatcttttgcatatgcagaag
gtactttcagagaataaggaaaaatggagtagttttaataaaatttcaaaggagatagaa
gagggaacagcgaaggtttctacattaagaagatctttagatgaatatagtgaaattata
agtaaagaagaagaggctttagcgtctatgaaagataatcttgatattatgggaaaagag
atgttagctcataatttgagggaacaattaaaggatggagaaatatgtcctgtttgtggt
tctaaggatcattttaaagaaaatataaaagttgttaagatagaaggtattaaagaactt
gaagataatataaaggataaggaagctttattaaaggattataatgagaaaattactata
gttaaggcgaatattacaaatgaggaagaaaaactacatgaaaataataaattgttatta
gaattaggaacagaatttaaaaatatatctcccaaggaaatggaagagaatctagaaaaa
ttaaaaaatgacattgaaaatcatattaagagaaaagagcaattagaaaaagaagtaaac
ataagcaaagaggaaaaatcaaacttagaaaaaaagataagtaattttgctgttgaaata
gaaaacttaaataaacaatttattgaactagataaagaaaataatattacaaaagaagat
tttagtgaagtagagaaatctttaaattcattagttaaagatacaaatattgaagatttc
aaaagtaaatgggaagaaataaaagctatagaagaaaaaagagaaaaacttttaggagaa
gtaaaaaaatatagaagtgataaggataaactaagcaaggataaagatgaaataacgaag
agtattgatgatttgagagcagaatttattgaaaagagaagtaatattcagtctttagaa
gataacagtaaagagaaaatagagtctataaagagcaaggtgggagacgtagaagatata
gatgaattattagtcactatagaaggtaaagtaaaagttatagaagagacatataaaaat
cttgaaaatgaaaaacttcttaaagataaggagtacactactgctaatgaaagttatagt
tctatattaggtaagaaagagcagcttttacatagaaaaggttcagaagaagaaacaata
aatgaaaagctaagagaagaaaagtttgcctctgttgatgaggtaagaagttatgaagta
tctaatgtaaaaatagaaaatctaaaaaaagaaatagaagaatataatgattcgctttta
aaaataaagggagctattgaaagtattaatgaaaaaataggggatagatctttagaagaa
gaaaagtgggaagaaataaagaattcaaaaacttctttagaagagcaatataaggtagta
agtgaagacaaggtaagaattgatgaggaaataaagataattaatacaaagttaaaggaa
atggaaggattacttggcaagaaagaaaaattagatcataaacttgcattgcttagtgat
ttagaaaaattatttaaaggaaagaaatttgttgagtttgtagcagctcatcagcttaaa
tatatctcgatggaagcatcaaagaggctaaaggaaataactaatggtaactatggtctt
gaagtagatgaaaacggaaagtttattataagagactacaaaaatggtggagcagaaaga
gatgcaactactctttcagggggagaaaccttcttagcatcattagcattagcattagct
ttatcagcacaaattcaattaaaaggcacagcgcctttagagttgttctttttagatgaa
gggtttggaacattagatgataatctattagatgtggtaatgagttcccttgaaaagatt
cataatgacaaactaaaaataggtataattagccatgttgaggcaataaaaaacagagtg
ccaatgcaactagtaataacaccagcagaagcaggccgcggtggtagtaaagttgaaatt
gtcacaaattag
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