Clostridium bornimense: CM240_1708
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Entry
CM240_1708 CDS
T03165
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
clt
Clostridium bornimense
Pathway
clt03030
DNA replication
clt03430
Mismatch repair
clt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CM240_1708 (polC)
03430 Mismatch repair
CM240_1708 (polC)
03440 Homologous recombination
CM240_1708 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
clt03032
]
CM240_1708 (polC)
03400 DNA repair and recombination proteins [BR:
clt03400
]
CM240_1708 (polC)
Enzymes [BR:
clt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CM240_1708 (polC)
DNA replication proteins [BR:
clt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CM240_1708 (polC)
DNA repair and recombination proteins [BR:
clt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CM240_1708 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
HHH_6
DNA_pol3_a_NII
tRNA_anti-codon
Rv2179c-like
RNase_H_2
DEDDh_C
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
CDM68866
UniProt:
W6RVZ2
LinkDB
All DBs
Position
rep1:complement(1862940..1867265)
Genome browser
AA seq
1441 aa
AA seq
DB search
MERLVEKVNLAIDEDKILKALNIKVSKFQFLKKSQRLRVLLKGKDDIDDTVVYAVKKIVI
ENIGIFDDCDVLYSKDLSNITLDQLTNNYWSDFIHLTLEKKKVLYRALSCCEKVVNDDDV
KLIVDSKFIFQYLQDNRIDLFLKEKAKELFGVNTSFSFSFDEKAMEIYIKDREEESREII
SKVIKSAGELKKENKSKENTQSKEKPSNPYMQKGRKSEPKDENTLYGKKIVVEEITKIAD
INMGSGYVTIKGDLFKIDVFETKAGRKIISLFVTDHTSSIIVKVFPKGDTADELLENIKK
GMHLILRGEAAYDSFAREVTVSCRDINLSKKVERMDTSTEKRVELHLHSTMSAMDGMTPI
SKLVERAAKWGHKAIALTDHGVVQGFPEAMDAAKKNNIKVIYGVEGYVVNDGEPIVINPG
NETIDSEFVVFDIETTGFSSINDKIIEIGAVKVKNGSIVDRFSHFVNPEVSIPAKIIELT
GITDDMVRDADTIDVVLEKFREFTKGTILVAHNAPFDTSFIKKNYKDLGITFDNGIMDTI
PLSKFLYPDLKRYKLNLICKHLGISLENHHRAVDDAEATAEILLHSFKVLKEDNIISLND
LNDKYISNTDVKKLPSHHIIIFATNQLGCKNLYKIISESNLKYFFRTPRMPKSVISSLRE
GLMIGSACEAGEVYKEIMLGRSDEEMEKIISFYDYLEIQPVGNNEFMIEKGIVKDADELR
EINKRIYNLGKKYNKPVVATGDVHFLDPEDSVFRKILMAGKGFSDAENQPPLYFKTTNEM
LDEFSYLGRDEAYEVVIKNPNKIADIVEVIKPIPDETFPPKIDGAEEELREMTLNKVHSI
YGDNLPDIVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVGSRGSVGSSFVATM
SGITEVNGLPPHYVCPECKYSHFFDDGSVASGADLPDKECPKCGAILNKDGHDIPFETFL
GFEGDKEPDIDLNFSGDNQGDIHKYCEVLFGEGHTFKAGTIGTIADKTAYGFVKKYLDEK
EIVVSSAEIERLSQGCTGVKRTTGQHPGGIMVVPADNEIYNFTPVQRPADDPTSDIVTTH
FDYHSISGRLLKLDILGHDDPTVLRMLQDLTGVDPKSIPLGDPKVMSLFTSPEALGLTRE
ELECEVGSYGLPEFGTKFVRQMLVDTQPHTFADIVRISGLSHGTDVWLNNAQYFIKEGYT
TLKDCIATRDDIMVYLIYQGLPPKEAFNIMEKVRKGKGLSEENEALMREHNVPDWYIESC
KRIKYMFPKGHAVAYCMMAVRIAYFKVYYPRAYYATYFTVRGDDFDGNLIIKGEMTIKAK
IDEFNNSAELSVKDKGLLTTLEICYEMYKRGIKFLKVDIYKSDANKFIIEDDSIRMPISA
LNGVGENAAKSIFEAAKDGEFISKEDLRNRAKVSKTVIETLDEHGCLEGLPDTNQLSLFS
L
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggctggttgaaaaagttaatttagcaatagatgaagataaaattttaaaagca
ttaaatatcaaggtaagtaagtttcaatttttaaaaaagagccagcgcctaagagtatta
ttaaaaggtaaagatgatatagatgatactgtggtatatgctgtaaaaaaaatagttata
gagaatataggaatatttgatgattgtgatgttctatattctaaagatcttagtaacata
acattagatcaattgacaaataactactggagtgattttatacatttaactttggaaaaa
aagaaagtattatatagggctttaagttgctgtgaaaaagtagttaatgatgatgatgtt
aaacttattgttgatagtaagtttatatttcaatatttgcaggataataggattgattta
tttttaaaagaaaaagcaaaagagttatttggagttaatactagtttttcttttagtttt
gatgagaaagctatggaaatttatataaaggatagggaagaggaaagcagagaaattata
tctaaggttataaaatctgcaggagaattgaaaaaggaaaataagagtaaagaaaatact
caaagtaaagaaaaaccttcaaatccatatatgcaaaaaggacgtaagagtgaaccaaaa
gatgaaaatactttatatggtaaaaagattgttgttgaagaaataactaagattgcagat
ataaatatgggatctggttatgtaacgataaaaggagatttattcaaaattgatgttttt
gaaactaaagctggaagaaaaataatctctttatttgtaacagaccatacatcatcaatt
atagtaaaggtatttccaaaaggagataccgctgatgagttattagaaaatataaagaaa
ggtatgcatcttatattaagaggtgaagctgcctacgattcctttgcaagagaagttact
gtttcttgtagagatataaatctttctaaaaaggtagagagaatggatacatcaacagaa
aagagggtagaattgcatctccatagtacaatgagtgctatggatggtatgactcctata
agcaagttagtagaaagagcagcaaaatggggacataaagcaattgctttgacagatcat
ggcgtagttcaaggatttccagaagctatggatgccgctaagaaaaataatataaaggtg
atatatggtgtagagggatatgttgtaaatgatggggagcctattgtaattaatcctgga
aatgagaccattgatagtgaatttgtagtatttgatatagaaactacgggcttttcatca
attaatgataagataatagagattggtgccgtaaaagttaaaaatggtagtatagtagat
agattttctcattttgtaaaccctgaggtaagtatccctgcaaaaataatagagcttaca
ggaataactgatgatatggtaagagatgctgatactattgatgtggttttggaaaagttt
agagaatttactaaaggtactattttagtggctcataatgctccttttgacacatctttt
ataaagaaaaattataaagatttaggtataacttttgataatgggataatggatacaatt
ccattaagtaaatttttatatccagatttaaagagatacaaattaaatttaatttgtaaa
catcttggaatttctttagaaaatcatcatagagctgtagatgatgcagaggctacagca
gaaatattactacattcttttaaggtattaaaagaagataatataatttctttaaatgac
ttaaacgataagtatataagtaatactgatgtgaaaaagttacctagtcatcatataatt
atttttgcaacaaatcaattgggatgtaaaaatttatataagattatttcagagtcaaat
ttaaagtatttctttaggacacctagaatgcctaagtcagtaatttcctctttaagggaa
ggtctgatgattggttcagcttgtgaagctggtgaggtatataaagagattatgctcggc
agaagtgatgaggaaatggaaaaaatcatatctttctatgattacttagaaatacaacca
gttggtaataatgagtttatgattgagaaaggtatagtaaaagatgctgatgagcttaga
gaaattaataaaagaatatataatttaggtaaaaaatataataagcctgtagtggcaaca
ggagatgtacatttccttgatccagaagatagtgtatttagaaaaatactaatggctggt
aaaggattttctgatgctgaaaatcagccaccactttattttaagacaactaatgaaatg
ttagatgaatttagttatttaggtagagatgaagcttatgaagtagttataaaaaatcct
aataaaattgcggacattgttgaggttattaagcccattccagatgagacttttccacct
aaaatagatggtgctgaggaagaacttagagaaatgactttaaataaggttcattcaata
tatggagataacttaccggatatagtgcaaaagagactagataaagagttaaattctatt
ataaataatggatatgcagtgttgtatcttatagcacagaaactagtggctaaatcatat
tcagatggatatttagttgggtctagaggctctgttggatcttcctttgtagctactatg
tcagggattacagaagttaatggattaccacctcattatgtatgtccagagtgtaaatat
tctcacttttttgatgatggttctgtagcttcaggagcagatttgccagataaggaatgt
cctaagtgtggagcaatactcaataaggatggacacgatattcccttcgaaacattctta
ggatttgaaggtgataaagagccagatatagatcttaacttctctggagataaccaaggt
gatattcataaatattgtgaagtattatttggagaaggacatacttttaaagctgggaca
attggtactatagcagataaaacagcatatgggtttgttaaaaagtatttagacgaaaag
gagattgttgtttcatcagcagagatagaaagattatcgcaaggatgtacaggggttaag
agaacaacagggcagcatccaggtggaataatggttgtacctgcagataatgaaatttat
aactttacaccagtgcagagacctgcagatgatccaacttcagatattgtaactactcat
tttgattatcactctataagtggaagactattaaaattagatatacttggtcatgacgat
cctacggtactaaggatgttgcaagatttaacaggagtagatcctaaatctattcctctt
ggggatcctaaagttatgagtttgtttacatcaccagaagctttaggattaactagagag
gaattagaatgtgaagtgggaagttatggattgcctgagtttggtactaaatttgttaga
caaatgcttgtagatactcagccacatacttttgctgatatagtgagaatatcaggacta
tctcatggaacagatgtatggcttaataatgctcagtactttataaaggaaggatataca
acacttaaagattgtattgctacaagagatgatattatggtgtatttaatataccaagga
cttccgccgaaagaagcatttaatataatggagaaggtaagaaaaggtaaagggttatca
gaagaaaatgaagcactaatgagagagcataatgttcctgattggtatattgaatcttgt
aaaagaataaaatacatgttccctaaagggcacgcagtagcttactgtatgatggcagtt
cgaattgcgtattttaaggtatattaccctagggcatattatgccacttattttacagta
agaggcgatgattttgatggtaatttaataataaaaggtgaaatgactataaaagcaaaa
atagatgaatttaataattctgctgaactttctgtaaaagataaaggattgcttacaact
cttgaaatatgttatgaaatgtataagaggggtataaaattcttaaaagtggatatatat
aaatctgatgcaaataagtttattatagaagatgatagtataagaatgcctataagcgca
ttaaatggagtaggagaaaatgctgcaaaaagtatatttgaagccgcaaaagatggagaa
tttatttctaaagaagatctaagaaatagagctaaagtatctaaaacagttattgaaaca
ttagatgaacatggatgcttagaaggacttccagatactaaccaattatcactatttagt
ctataa
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