Clostridium bornimense: CM240_1959
Help
Entry
CM240_1959 CDS
T03165
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
clt
Clostridium bornimense
Pathway
clt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CM240_1959 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clt03019
]
CM240_1959 (rnjA)
Messenger RNA biogenesis [BR:
clt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CM240_1959 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
CFAP54_N
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CDM69117
UniProt:
W6S456
LinkDB
All DBs
Position
rep1:complement(2150033..2151724)
Genome browser
AA seq
563 aa
AA seq
DB search
MRKVRAKEAESEKDIIKIIPLGGLNEVGKNMTAFEFRDEIIVIDCGLKFPDDEMYGIDLV
IPDITYLLKNKEKIKGIFLTHGHEDHIGALPYVLKEINVPVYGTKLTLGIVETKLKEHGL
LSVVNLVKVRSRNIIKLDNMAVEFIRVSHSIADACSIAIHTPAGVIFHTGDFKIDYTPID
GGMPDLARFAELGKRGVLAMLADSTNVEKPGYTMSESSVGDTIVEIFRNTKGRIIVATFA
SNVHRIQQIIEAAEMFNRRVAVSGRSMENIVAVAMELGYIKAEKNTMIPIDAINKYNDEQ
IVVITTGSQGEPMSALSRMASSDHKKINIKHGDKVIISATPIPGNEKLVSNVINQLFKKG
ADVIYSKLANVHVSGHACQEELKLMHTLIKPKYFIPVHGEYRHLKQHGELAVKLGMKPEN
VFIGEIGDVIEVSRSAVKKSGTVTSGQVFVDGLGVGDVGNIVLRDRKHLSKDGILTVVVT
IEKGSGNVVAGPDIISRGFVYVRESEDLMDEAREIVKEALRYCEEEHLTEWSTIKGNIKD
SLRDFLYERTKRKPMILPIIMEV
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaggtaagagctaaagaagcggaaagtgaaaaggatataataaaaatcatacca
cttggtggtctaaatgaagtaggaaaaaatatgactgcttttgaatttagagatgagatt
atagttatagactgtggtttgaaatttccggatgatgagatgtatggtatagatttagtt
ataccagatataacttacttattaaagaataaagaaaaaattaaaggaattttcttaaca
catggacatgaagaccatataggggcattgccgtatgtgttaaaagaaattaatgtacca
gtatatggaacaaaattaactttaggaatagtggaaactaaattaaaagagcatggatta
ttaagtgtagttaatttagttaaagttagatcaagaaatattataaaactagataatatg
gcagtagaatttataagagtatctcattctatagcagatgcatgttctattgctatacat
acaccagcaggtgttatattccatactggagattttaaaatagactatacaccaattgat
ggtggaatgcctgatcttgctagatttgctgaactaggtaaaagaggagttttagcaatg
cttgcggattctacaaatgttgaaaaaccaggatacacaatgtctgaatcaagtgttgga
gatacaattgtagagatatttagaaatacaaaaggaagaataattgttgctacatttgct
tcaaatgttcatagaatccaacaaattatagaagcggctgaaatgttcaatagaagagtt
gcagtatcaggaagaagtatggaaaatatagttgctgtagctatggaacttggatatata
aaagctgaaaagaacacaatgatacctattgatgcaataaataagtataatgatgagcaa
atagtagttataactactggaagccaaggagaacctatgtctgcattatctagaatggca
tcatcagatcataaaaaaataaatataaaacatggagataaagttataatatcagcaact
ccaattccaggaaatgaaaaattggtatctaatgtgattaatcaattatttaaaaaaggt
gctgacgttatttattcaaaacttgccaatgtccatgtttctggtcatgcatgtcaagaa
gaattaaagcttatgcatactttaataaaaccaaagtattttattcctgttcatggagag
tacagacatcttaagcaacatggagaacttgctgttaagcttggtatgaagccggaaaat
gtatttattggtgaaattggagacgtaattgaagtttcaagaagtgctgttaaaaagagt
ggtactgttactagtggtcaagtttttgttgatggcttaggtgttggtgatgttggaaac
atagttctaagagatagaaagcatttatctaaagatggtattctaacagtagttgttact
atagaaaaaggatcaggaaatgttgttgcaggtccagatataatttcaagaggttttgta
tatgttagagaatcagaagatcttatggatgaagctagagaaattgtaaaagaagctcta
agatattgtgaagaagaacacttaactgaatggtctactattaaaggtaacataaaagac
tctttaagagatttcttatatgaaagaacaaagagaaaaccaatgatactaccaataata
atggaagtataa
DBGET
integrated database retrieval system
