Clostridium bornimense: CM240_2459
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Entry
CM240_2459 CDS
T03165
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
clt
Clostridium bornimense
Pathway
clt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
clt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CM240_2459 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clt03021
]
CM240_2459 (rpoC)
03400 DNA repair and recombination proteins [BR:
clt03400
]
CM240_2459 (rpoC)
Enzymes [BR:
clt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CM240_2459 (rpoC)
Transcription machinery [BR:
clt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CM240_2459 (rpoC)
DNA repair and recombination proteins [BR:
clt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CM240_2459 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CDM69596
UniProt:
W6RY56
LinkDB
All DBs
Position
rep1:complement(2667769..2671293)
Genome browser
AA seq
1174 aa
AA seq
DB search
MELNNFDMLQIRLSSPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPIKDWECH
CGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKVLYFANYIVLDPKETPLLKKQLLTEKEYREAVDKYGDNFVAGMGAESIKILLAE
MDLDRTVEELKEELKSAAGQKKIRIIRRLEVVESFRASNNRPEWMITEVIPVIPPDLRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGRR
GRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELQMYQCGLPKEM
ALELFKPFVMKKLVESGVAHNIKSAKRMVERVQAQVWDVLEEVIQDHPVLLNRAPTLHRL
GIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNIMK
PSDGKPVCVPTQDMILGSYYLTLEKEGSKGEGKVFSSKEEALMAYELGEIAINAKIKVRM
YKEINGELRHGIIDTTVGKIIFNESIPQDLGLVDRSIPGNEFKLEVDFLVAKKNLGKLID
KCYQKYGPTETSIMLDKIKAKGYHYSTIGAITVATSDMIVPESKKALLEDAESTVEKIEK
MYRRGFISDDERYEKVIEKWNETTENIADALMDSLDQFNPIFMMADSGARGSKSQIKQLA
GMRGLMANPSGKIIEQPIKACFREGLNVLEYFISTHGARKGNADTALKTADSGYLTRRLV
DVSQDVIVRSHDCGTTEGYEVYAIKEGNEIIEPLSERLTGRYCAEDIINPETGEVMAERN
TYIEHDMAEKIEAAGVEKVKIRSVFTCDSKYGVCSKCYGMDMATGTEVNIGEAVGIVAAQ
SIGEPGTQLTMRTFHTGGVASGADITQGLPRVEELFEARKPKGLAIVSEVAGTVKIEETK
KKRVVIVITAEGEEVSYDIPFGSSLKVSNGDLIEAGDEITQGSVNPHDIIRIKGVKAVKN
YLLSEVQKVYRLQGVDINDKHLEVVVKQMTRKVKVDESGDTNLLPGTMIDIYDFEEVNNK
VIAEGGEPAKGNETLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKIDPLIGLKENV
IIGKLIPAGTGMKRYKSIKIKTKNPDDMDIVESI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttggaattaaataattttgatatgttacaaataagactttcttcaccagaaaaaataaga
gaatggtctagaggtgaagttaaaaagcctgaaacaattaattacagaacattaaaacct
gaaaaagatggtttattctgtgaaagaatatttggaccaataaaagactgggaatgtcac
tgtggaaaatataagagagttagatacaaaggtatagtttgtgaccgttgtggtgttgaa
gttacaaaatctaaagtcagaagagagagaatggggcatatagaacttgctgccccagta
tctcacatatggtactttaagggtataccatcaagaatgggattaattcttgatatgtca
ccaagagctttagaaaaggtactttattttgcaaattatattgtattagaccctaaagaa
actccactactaaagaaacaattattaactgaaaaagaatatagagaagcagttgataaa
tatggagataactttgtagctggaatgggtgcagaatctataaagattcttcttgctgaa
atggatctagacagaactgtggaagaattaaaagaagagcttaagagtgctgcaggacaa
aagaaaatcagaataataagaagactagaagttgttgaatcatttagagcatcaaataat
aggccagaatggatgataacagaagtaattcctgttattccaccagatttaagaccaatg
gttcaattagatggtggtagatttgctacttcagatttaaatgacttatatagaagagtt
ataaatagaaataacagattaaagaagcttttagatttaggagctcctgatataattgtt
agaaatgaaaaaagaatgttacaagaagctgtagatgctcttatagataatggtagaagg
ggtagaccagttacaggtccaggaaatagaccacttaaatcattatcagatatgcttaaa
ggtaagcaaggtagatttagacaaaacctacttggtaaaagggttgactactctggtaga
tcagttatcgttgtaggaccagaacttcaaatgtaccaatgtgggcttccaaaagaaatg
gcattagaattatttaagccttttgtaatgaagaaacttgttgaaagtggagttgcacac
aatattaagagtgcaaagagaatggtagaaagagttcaagcacaagtatgggatgtactt
gaagaagtaattcaagatcatccagtgttacttaaccgtgctcctactcttcatagatta
ggaattcaagcgttccaaccaatacttgtagaaggtagagctataaaacttcatccactt
gcatgtacagcatataatgccgacttcgatggtgaccaaatggcggttcacgtaccgtta
tctgttgaagcacaagcagaagcaagattcttaatgttagcagcacataacataatgaaa
ccatctgatggtaaaccagtatgtgttcctacacaggatatgattcttggatcatactac
ttaacattagaaaaagaaggatcaaaaggtgaaggaaaggtattttcttctaaagaagaa
gctttaatggcttatgaattaggagaaatagctattaatgcaaaaattaaagttagaatg
tataaagaaataaatggagagcttagacatggaataattgatacaactgttgggaaaatt
atatttaacgaatctattccacaagatttaggtttagtagatagaagtatcccaggaaat
gaatttaagcttgaagttgatttcttagtagctaaaaagaatttaggtaaacttattgat
aaatgttatcaaaagtatggtcctactgagacatctataatgcttgataaaataaaggca
aaaggatatcattattcaacaattggagctataactgttgctacatctgatatgatagta
ccagagagtaaaaaagcactactagaagatgctgaatcaactgttgaaaagatagaaaag
atgtatagaagaggattcatttctgatgatgaaagatatgaaaaagttatagaaaaatgg
aatgagactactgaaaatatagctgatgctctaatggatagtttggatcaatttaatcca
atattcatgatggctgactctggagccagaggttctaagtctcagatcaaacagcttgct
ggtatgagaggacttatggctaatccatctggtaagatcatagagcaaccaatcaaagca
tgttttagagaaggacttaatgtattagagtactttatatctacacatggagctagaaaa
ggtaatgctgatacagcattaaagactgctgactcaggatacttaactagaagacttgtt
gacgtatcacaagacgttatagtaagaagtcatgattgtggaactacagaaggatatgaa
gtttacgcaataaaagaaggtaatgaaataatagaaccattaagtgaaagattaacaggt
agatattgtgctgaagacataattaatcctgaaacaggagaagttatggcagaaagaaat
acttatatagaacatgatatggctgaaaaaatagaagctgcaggtgttgaaaaagtaaaa
ataagatcagtatttacatgtgattctaaatatggagtatgctcaaaatgttacggtatg
gatatggcaactggtacagaggttaacattggagaagcagttggtatagtagcagctcaa
tctatcggtgaacctggtacacagcttacaatgagaacattccatacaggaggagttgca
tcaggagcagatattactcaaggtcttcctagagtagaagagttattcgaagcaagaaag
cctaagggtcttgctattgtatcagaagttgccggaacagttaaaatagaagaaactaaa
aagaagagagttgtaattgttattacagctgagggtgaagaagtaagctatgatatccca
tttggatcatctttaaaagtatctaatggagatcttatagaagctggtgatgaaatcact
caaggttcagtaaacccacatgatattataagaattaaaggtgttaaagccgttaagaat
tatctattatcagaagttcaaaaagtttatagacttcaaggggttgatattaacgataag
catctagaagttgttgtaaaacaaatgactagaaaagttaaggttgatgaatcaggagat
actaacttattaccaggaacaatgattgatatttacgattttgaagaagtaaataataaa
gtaatagctgaaggtggagaacctgcaaaaggtaatgaaacattattaggtattacaaaa
gcatcacttgcaacagattcattcttatcagcagcatcattccaagaaactacaagagtt
cttacagatgcagctataaaaggaaagatagatccacttataggattaaaagaaaatgta
attataggtaagttgattcctgcaggtactggtatgaagagatataagtcaataaagata
aaaactaaaaatccagatgatatggatatagttgaaagtatataa
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