Clavispora lusitaniae ATCC 42720: CLUG_00273
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Entry
CLUG_00273 CDS
T01149
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03013
Nucleocytoplasmic transport
clu03015
mRNA surveillance pathway
clu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUG_00273
09122 Translation
03013 Nucleocytoplasmic transport
CLUG_00273
03015 mRNA surveillance pathway
CLUG_00273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clu03019
]
CLUG_00273
03041 Spliceosome [BR:
clu03041
]
CLUG_00273
Enzymes [BR:
clu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUG_00273
Messenger RNA biogenesis [BR:
clu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLUG_00273
Spliceosome [BR:
clu03041
]
Complex C
Other components
EJC/TREX
CLUG_00273
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CLUG_00273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
ApbA
Motif
Other DBs
NCBI-GeneID:
8499795
NCBI-ProteinID:
XP_002619114
UniProt:
C4XWF0
LinkDB
All DBs
AA seq
290 aa
AA seq
DB search
MPDVKTDVFYGGTPIARDLEKLKNKDTCPHIVVATPGRLHALVAEKGIRLGNVKSFVIDE
CDKVLESLDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQSPLEIYVDDEAKL
TLHGLQQYYLKLSEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAV
HSGMKQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGR
AGRFGTKGLAISFVSTKEDEEVLEKIQSRFDVKVTEFPEEGIDPSTYMNT
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgtcaagactgacgttttctacggaggaaccccaattgctagagacttggag
aagttgaagaacaaagacacttgtcctcacattgtcgtggctactccaggtagattgcac
gcgcttgttgcagaaaagggcattcgtttgggcaacgttaagtcgtttgttattgacgag
tgtgacaaggtcttggagtccttggacatgagaagagatgtccaagacatcttcagaaac
acccctcaccagaagcaggtgatgatgttttctgccaccttgtcgcaggaaattcgtcca
gtctgcaagaagttcatgcaaagcccattggaaatttatgttgacgatgaggccaagttg
actttgcacggtttgcaacaatactacctcaagttgtctgagaaggaaaagaacagaaag
ttgtcagacttgttggactctttggaattcaaccaggttattattttcgtcaagtctacc
cagagagctaacgagttgaacaagttgttgtgtgcctgtaacttcccttccattgctgtc
cactcgggcatgaaacaagaggaaagaattgctagatacaagtcgttcaaggagttcaac
aaacgtatctgtgtctcgactgatgtgttcggtagaggtattgacattgaaagaatcaac
ttggctatcaactacgacttgccaagtgaagctgaccaatacttgcacagagttggtaga
gctggtagatttggtactaagggattggccatttcctttgtttccaccaaggaggacgag
gaagtgttggaaaagatccaatcgagattcgacgtgaaggtcacagagttcccagaagaa
ggtatcgacccttcgacctacatgaacacttga
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