Clavispora lusitaniae ATCC 42720: CLUG_00520
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Entry
CLUG_00520 CDS
T01149
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUG_00520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clu03019
]
CLUG_00520
Messenger RNA biogenesis [BR:
clu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
CLUG_00520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
dCache_1
Motif
Other DBs
NCBI-GeneID:
8500050
NCBI-ProteinID:
XP_002619361
UniProt:
C4XX47
LinkDB
All DBs
AA seq
738 aa
AA seq
DB search
MSDKHALFDTVFPKTVKAVRAASALAAQDINFYTSLDKGISSDVKDASSSLLALANKLLS
KTTKDFEFIEYGEENIVSKLNWKRVSDVLDTCFEKADLALDEVKNPQRASTSHMIYLKDS
SDEKKATEVKVKPQENFRSTVDNSDSSPFKPRLENKPYALKSLEESLKLRFPDPTDDGKV
SAPHYAHPYEFEIMNQPYPESCLQVNKPVPSTDWATTAAKWVDTVDALQEMIEALRSSTE
IAIDLEHHDYRSYYGITCLMQISNREQDWIVDTLALHDDLRDLNEIFANPAILKVLHGAN
MDIIWLQRDLGLYIVSLFDTYHASKKLGFPKFSLAYLLENFAHFKTSKKYQLADWRIRPL
TDAMMQYARADTHFLLNIYDQLRNKLLNAGQGKVQEVLYESRKVASRRFEFNSFKQDQTD
NWMHSYGGMGQERWVMNQYNIEPERIEIVQALINWRDKVAREKDESTRYIMSNQVLANLS
SLVAPVDASKVHNAAGSQYSIVRQNSKELAELIEKYLATVGHSANNENVTSFDLTEVNYD
KASEISKHFTDLTKSVPTATNLSLSDKDSRLLSKFAGKSFSLSAESFEPSTNERIRISQE
ELMKRATLLSESLAENLTSFEIENEKSKIDNMEEAEEKIDKSATESPQRQSSEEDKDAIV
VLSGKKSKKSFNKKQSTADEELFDYSTVEEKVLANVKNGNTKKRSFDPFSRQGTGPKAAK
RSRNVPTGKSTSFVKKRN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaagcacgccttattcgacacagtgttccccaaaaccgtgaaagcggttcgt
gcggcatcggctctagctgctcaagacattaacttctatacctctttagataaaggtatc
tcaagcgacgttaaggatgcttccagttcgttactcgcgttagcaaacaaattactttcg
aagactacgaaagacttcgaattcatagaatacggagaagaaaatatcgtgagcaaattg
aattggaaaagagtgtcagatgtgttggatacatgcttcgagaaagcagacttagcattg
gacgaagtgaagaacccgcaaagggcactgacatcgcacatgatatatttgaaagattcg
tcagatgagaaaaaagctactgaagtgaaagttaagcctcaagaaaacttcagaagtaca
gttgataatagcgactccctgcccttcaaacctcgattggagaacaaaccttacgcgctc
aagtctctcgaagaatccctaaagttgcgatttccagatcccacagatgatgggaaagtt
tctgctccacattatgcccacccatacgagtttgagattatgaaccagccttatccagaa
ctgtgtttgcaggttaacaaaccagtaccatctacggattgggcaacgactgccgccaag
tgggttgatactgttgatgctctccaagagatgatagaggcattacggtcgctgacagag
atagctattgatcttgaacatcacgattaccgttcgtattatggtattacatgtttgatg
caaatatctaacagggaacaagactggattgttgatactttagccctacatgatgactta
cgtgatttaaatgaaatatttgccaatccagccattttaaaagttcttcacggtgccaat
atggatatcatttggttacagagggatttaggactttacattgtctccttgtttgacacg
taccatgcatcgaagaaattgggattccctaagttctctttagcatatttattggagaac
tttgcacattttaaaacctccaaaaaatatcaactagcagactggaggatccgccctctt
acagacgctatgatgcagtacgctagagcagatacacatttccttttgaatatttacgac
caacttcgtaacaaacttttgaacgcaggacaaggaaaggtccaagaagtcttatatgag
tctagaaaagtggcatccaggagatttgagttcaactcattcaagcaagaccagacggat
aactggatgcacctgtatggtggaatgggacaagagagatgggtaatgaatcaatacaac
attgaaccggaaagaattgaaattgtgcaagcactcataaattggagggataaagttgcc
agagaaaaggatgaatcgacgagatatatcatgctgaatcaggttctagcaaacttaagc
tctttagttgccccagtagatgcatcgaaggttcataatgctgcgggaagtcaatacctg
attgtgcgtcagaattctaaagagttggccgaattgattgagaagtacttagccactgtt
ggtcactctgcgaacaatgaaaatgtgacctcttttgatttgactgaggtaaactatgac
aaggcctccgaaatatccaaacactttacggatctcacaaaaagtgtaccaacagcaacg
aatctatccctcagtgacaaagactcccgtttgctctcaaaatttgcgggaaagagtttt
tctcttagtgctgaaagcttcgaaccatcaacaaacgagcgtatacgtatttcacaagag
gaacttatgaagagggccacacttttgctggaaagccttgctgaaaatttgacttccttt
gagatagaaaacgaaaagtcaaaaatcgataacatggaagaagcagaggagaaaatcgat
aagtctgccacagaaagtccacaacggcagtcttcggaagaagataaagacgcaattgtc
gtgctttcaggaaagaagtccaagaaatcttttaacaaaaaacaatctactgccgatgaa
gaattattcgactattctactgttgaagagaaggtgttagcaaatgtgaagaatggcaat
accaagaaaagatcatttgatcctttcagtagacagggcacgggtccaaaagcagcgaag
agaagcagaaatgtccccacaggtaagtctacatcttttgtgaagaagaggaactaa
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