Clavispora lusitaniae ATCC 42720: CLUG_00841 Help Entry CLUG_00841        CDS       T01149                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism clu  Clavispora lusitaniae ATCC 42720 Pathway clu03013   Nucleocytoplasmic transport clu03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:clu00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     CLUG_00841    03015 mRNA surveillance pathway     CLUG_00841  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:clu03019]     CLUG_00841 Enzymes [BR:clu01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      CLUG_00841     5.6.2.5  RNA 5'-3' helicase      CLUG_00841 Messenger RNA biogenesis [BR:clu03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      CLUG_00841    mRNA cycle factors     Common to processing body (P body) and stress granule      CLUG_00841 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 UPF1_Zn_bind AAA_11 UPF1_1B_dom AAA_30 AAA_19 Viral_helicase1 SLFN-g3_helicase ResIII DEAD NAT10_TcmA_helicase NPHP3_N AAA_16 AAA_22 UvrD-helicase UvrD_C_2 PhoH AAA nSTAND3 NLRC4_HD Flavi_DEAD Motif Other DBs NCBI-GeneID:  8500429 NCBI-ProteinID:  XP_002619682 UniProt:  C4XY18 LinkDB All DBs AA seq 967 aa AA seqDB search MRTPMRTLSTFHQISAPTMGSTTTSSDEHETRAAAGTPVLDPSVPIDGGAPSQPLSLTDE TEHLTAYQHGNGNESEKDGEHDHEAEPTEACSYCSTSDPASLARCGTCQRWFCNGSSSKA GSHIVAHLVHSKHSEISLHEQSALGGDPLECYNCGSRNVFALGFVAAKQESVVVLLCRMP CAQARDINWATNEWQPLVEARALLPWVAAQREPARDVKPAQMARLEAQWRVKRDATLADV DADADGARDLAMALLRYPDALEYQHVWAPLVEAEAACDKFMKESRVLDHLSVTWGTVASG RHTASFIVSTYETSELHVAVGDEVVLHHRDFGAAEWSGAGVLVAVPGARTDIYTVELQPS VVPPQATTGFSAEIVWKGTPYQRMQHALFRFATSNESVSAYVYHKILGHDVVEVEFDGEN SLNNKRCSALNASQRAAVAHAIASPLTLIQGPPGTGKTVTSAAIVRELVRLRRSRVLVCA PSNVAVDHLALKLRAAGLKVVRLAARSREDIESEATPLALHTQVRAAIPRRVRTLVDKQA SGGELDARAKARIARSWRAAEQKLISSADVICTTCVGADDRRLEEYEFPIVLVDESTQAT EPEALIPITRGAKQVVLVGDHQQLGPVVLDPAASAAGLRRSLFERLVSMGHVPLRLEVQY RMHPALSEFASNMFYEGSLLNGVTSDDRTRPGADFPWPVPDRPMMFWANYGKEEIGANGS SYLNRVEAMNVDKIIARLVRDGVSPDQIGVITPYEGQRVYIWQYLKLNSTVPKSALNELE VEVSSVDAFQGREKDYIILSCVRANEDRDIGFLKDSRRLNVALTRAKFGLIILGNPRSLS KNKLWNSLLVHYRERGCLVEGPLDNLNLSLVPLGQTSNQEKSFISGPRNTDFDTQSMISH VVDGDDPEFHYDAPQESPLHDDVVWPSLSNNAASRLQEKKSQPSAYPKIAEDDLKAFASA FASGLNL NT seq 2904 nt NT seq  +upstreamnt  +downstreamnt atgcgcacacccatgcgcacactttctacttttcaccagatttccgctccaaccatgggc agcactacaacaagcagcgacgagcatgaaacgagagccgctgctggcacgcccgtattg gatccatctgtcccaatagacggcggagcgccgtctcaaccgctctcgcttactgacgaa accgaacacctcaccgcataccaacatggaaacggaaacgaaagcgaaaaagacggcgaa cacgaccacgaagccgagcctactgaagcatgctcctactgcagcaccagcgaccctgct tcgcttgcccggtgcggcacgtgtcagcgctggttctgcaacggctcgagcctgaaagcc ggctctcatatcgtggcgcacttggtgcacctgaaacacagcgagatctctttgcacgaa cagctggccttgggaggcgacccgttggaatgctacaactgcggcagccgcaacgtgttt gcgcttgggtttgtggcggctaaacaggagctggtggttgtgcttttgtgccgcatgccg tgcgcccaggcgcgcgatatcaactgggccaccaacgagtggcagccgctcgtggaggcg cgcgcgctcttgccgtgggtcgccgcgcagcgcgagccggcgcgcgacgtcaagccggcg caaatggcgcgcctcgaggcgcagtggcgggtcaagcgcgacgccactttggccgacgtg gacgccgacgccgacggcgcgcgcgaccttgccatggcgcttttgcggtacccggatgcg ctcgagtaccagcacgtttgggcgcctcttgtggaggcggaagcagcatgcgacaagttc atgaaggagctgcgcgtgttggaccatcttctggtcacatggggcaccgttgcctctggg cgccacacggcgctgttcatcgtgtcgacctacgagacgagcgagttgcatgtggcggtg ggcgacgaggtggtgttgcaccaccgcgatttcggcgccgccgagtggagcggcgcgggc gtgttggtggcggttccgggcgcacgcaccgatatctacaccgtcgagttgcagccaagc gtggtgcctccgcaggcaaccaccgggtttctggcggaaatcgtgtggaagggcacgccg taccagcgcatgcagcacgcgctcttccgctttgccacctccaacgagtctgtgtcggcg tatgtctaccataagatattgggccacgatgtggtggaggtggagtttgacggcgagaat tctctaaacaacaaacggtgcagcgccctcaatgcgtcccagcgcgcggcagtggcccat gcgattgccagtccgcttacgcttatccaaggcccgcccggaactggtaagaccgtcact tctgcggcgattgtgcgcgagctcgtgcggcttcggcgcctgcgggttttggtgtgtgcg ccttcgaacgtggcggtcgaccatttggccctcaaacttcgcgccgcgggcctcaaggtg gtgcgtctcgcagcccgctcgcgcgaagacatcgagtccgaggcaacgccgctcgccctc cacacacaggtgcgcgcggcgattccgcgcagggtgcgtacactagtggataaacaggcg agcggaggcgagctcgatgcgcgcgcaaaggctcgcatcgcccgcagttggcgtgccgca gaacagaaactcatttcgtcggccgatgtgatttgcactacttgcgtgggcgcggatgac cgccggttggaggaatatgagtttcctattgtcttggttgatgaaagcacccaagccacc gaaccggaagcattgattcccatcacacgcggcgcaaaacaggttgtgctcgtgggcgac catcagcaattgggcccggtggttttggaccccgccgcaagcgctgctggactccgcagg tcgcttttcgagcgccttgtgtccatggggcacgttcctttacggctcgaagtgcaatac cggatgcacccagcactctccgagtttgcgtccaacatgttctacgaaggtctgctttta aacggcgtaaccagcgacgaccgcacacgcccgggcgcagacttcccatggcctgttccc gaccggcccatgatgttctgggccaactacggcaaagaggagattggtgccaacggcagt tcgtacttgaaccgtgtggaggcaatgaatgtcgacaagattattgcacggcttgtacga gacggtgttctgcccgatcagattggtgtgatcactccatacgagggccagcgtgtctac atatggcagtatttgaagttgaacagcactgttcctaagagcgctttgaacgagcttgaa gtggaagtgtcttcagtggatgcatttcagggtcgtgagaaggattatatcattttgctg tgtgtccgtgccaatgaagacagagatatcggtttcttgaaagacctgcgccgtttgaat gtggcgcttactcgtgccaagttcggcttgattattttaggaaacccccgttccttgagt aaaaacaagctctggaacagtttgttggtgcactaccgtgagaggggatgtcttgtagag ggtcccttggacaatttgaatctctcgcttgtgcctttgggtcagacgtccaaccaggaa aaactgttcatttccggccctcgcaacacggacttcgacacccagtcgatgatttcgcat gtggtggatggagacgacccagaattccattacgatgcaccacaggaactgccgctacac gacgatgtggtatggccaagtctttcgaacaatgcggcttcacgtctacaagaaaagaaa tcgcaaccatcagcgtacccaaaaattgctgaagatgatctcaaggcgtttgccagcgcc tttgctagtgggcttaacttgtaa

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