KEGG   Clavispora lusitaniae ATCC 42720: CLUG_00867
Entry
CLUG_00867        CDS       T01149                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
clu  Clavispora lusitaniae ATCC 42720
Pathway
clu03013  Nucleocytoplasmic transport
clu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CLUG_00867
  09122 Translation
   03013 Nucleocytoplasmic transport
    CLUG_00867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clu03019]
    CLUG_00867
   03041 Spliceosome [BR:clu03041]
    CLUG_00867
Messenger RNA biogenesis [BR:clu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CLUG_00867
Spliceosome [BR:clu03041]
 Complex C
  Other components
   EJC/TREX
    CLUG_00867
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CLUG_00867
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Prp19 Beta-prop_WDR19_1st WDR55 ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_HPS5 EIF3I WDR90_beta-prop_4th Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_VPS8 CFAP251_N WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_IP5PC_F Beta-prop_EIPR1 Beta-prop_NOL10_N B-prop_COPA_B_2nd eIF2A WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_RIG_1st Tricorn_2nd ASA1 Beta-prop_TEP1_C WDR93 BBS2_Mid TP_0598_N WD40_2 Cytochrom_D1 NBCH_WD40 CRT10
Other DBs
NCBI-GeneID: 8499701
NCBI-ProteinID: XP_002619708
UniProt: C4XY44
LinkDB
AA seq 316 aa
MSAFFSNLRLFPARDLGSNGKPTQSEIVHVSINATGSRVINTRTDRSIRIWRSTVSLTDP
IVIENPHRGPVTCISWNPATETSFASVGGDGAVKLWKGSGHLEREIKLGKTAAHLVAYAP
DGDVMAVVADGSISIYNVAKGYTKIAHDSRPSKINALQWTNKGHNVFATGHDDGSICFWR
LDSMAIELLYTLQGHHSPVTCMCLDPRGRYLACGSREGIVSLWNTTDFTNLGVLSAVDRA
ISSLSASRDGTYLAVGYSEGADVKIYEYDTLTEVHNAPKSQAGKIGGQAAWFPNRTALII
VVDKGQVMSLAKKEVS
NT seq 951 nt   +upstreamnt  +downstreamnt
atgtctgctttcttttccaatctccgcctattccctgctagggatcttggaagcaatggc
aaacccactcaaagtgaaattgtacatgtttcaatcaatgcaacgggctcgcgtgtcata
aacacccgcacagatcgttcgattcgaatctggcggtctactgtatcattgacagacccc
attgtcattgaaaacccccacagaggacccgtcacgtgtatctcatggaaccctgctact
gaaacgtcttttgcaagcgttggcggcgatggagccgtcaaactatggaaaggtctgggc
catcttgaacgtgagatcaaattgggaaaaactgccgctcatttggtggcgtacgctcca
gatggtgatgtgatggcagtagtggccgatggcagcatttccatctacaacgtcgccaaa
ggttacacgaaaatagcacacgacagccgccctagcaaaatcaacgcgcttcaatggaca
aataaaggccacaacgttttcgccacgggccatgacgacggatccatatgtttttggcgc
cttgacctgatggccattgagcttttatatacgcttcagggccaccattcgcctgtcacg
tgtatgtgccttgatcctagagggagatatctagcttgcggcctgagggagggaattgtt
tcattatggaacactacagactttacaaacctcggtgttctttctgcagtagaccgagct
atcagcagcctttctgccagccgagacgggacgtatttggctgtgggttacagcgaaggg
gccgatgtaaaaatttatgagtacgatacactcacagaagttcacaatgcaccaaaaagt
caggcagggaaaattggtggacaggcagcgtggtttccaaatcggacagcgttgatcatt
gtggtcgataaaggacaagtgatgctgctcgctaaaaaagaggtgagctag

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