Clavispora lusitaniae ATCC 42720: CLUG_02434
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Entry
CLUG_02434 CDS
T01149
Name
(RefSeq) similar to ATP-dependent RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03013
Nucleocytoplasmic transport
clu03015
mRNA surveillance pathway
clu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUG_02434
09122 Translation
03013 Nucleocytoplasmic transport
CLUG_02434
03015 mRNA surveillance pathway
CLUG_02434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clu03019
]
CLUG_02434
03041 Spliceosome [BR:
clu03041
]
CLUG_02434
03009 Ribosome biogenesis [BR:
clu03009
]
CLUG_02434
03012 Translation factors [BR:
clu03012
]
CLUG_02434
Enzymes [BR:
clu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLUG_02434
Messenger RNA biogenesis [BR:
clu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CLUG_02434
mRNA cycle factors
Stress granule specific factors
CLUG_02434
Spliceosome [BR:
clu03041
]
Complex C
Other components
EJC/TREX
CLUG_02434
Ribosome biogenesis [BR:
clu03009
]
Eukaryotic type
90S particles
Helicases
CLUG_02434
Translation factors [BR:
clu03012
]
Eukaryotic type
Initiation factors
eIF-4
CLUG_02434
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Helicase_C_2
NAT10_TcmA_helicase
StrH_N
Motif
Other DBs
NCBI-GeneID:
8497863
NCBI-ProteinID:
XP_002616990
UniProt:
C4Y462
LinkDB
All DBs
AA seq
397 aa
AA seq
DB search
MEFDRSADAQIEFSSKSTKGVKVHATFESMKLKPELLKGIYAYGFEAPSAIQSRAIMQII
SGRDTIAQAQSGTGKTATFSIGMLQAIDWNVRQCQALVLSPTRELAIQIHNVIRNLGTYM
NIHTHACIGGKQVGDDLKKLNQGQHIVSGTPGRVLDVIKRRNLATRNVQMLILDEADELM
TKGFKEQIYEIYRHLPSTVQVVVVSATLTREVLEITSKFTTDPVKILVKKEDVTLEGIKQ
YHIQCEKEEWKFDTLCDLYDSLTITQAVIFCNTKSKVNWLADQLRKANFAVSSMHGDMKQ
EERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGR
KGVAINLITKDDVAEMKDLERYYKIRIREMPSDLSSL
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgatcgttcagcggatgctcaaattgaattttcttcaaagtcgacgaaagga
gtaaaagtgcatgccacttttgagagcatgaagttaaaaccagagcttctcaaaggtatt
tatgcatatggctttgaagctccgtctgcaattcaaagcagggctatcatgcagattatt
tcgggtagagacaccatagctcaagcacaatcgggaacaggaaaaactgccacattctcg
atcggtatgcttcaggcaatcgattggaacgtacgccaatgtcaggcgttggtactttcg
cctactagagagcttgctattcagatccataatgttattcgaaatttgggcacatatatg
aacatccatacccacgcttgtataggaggtaaacaggttggcgatgatttgaaaaagctt
aaccaaggtcaacatattgtgagcgggacacctggtcgagtactagacgtcattaagaga
agaaacttggctactaggaacgttcagatgcttatattggatgaggccgatgagctcatg
accaaaggtttcaaggagcaaatttacgaaatctatcgtcatcttccgtctactgttcaa
gtagtagtggttagtgccacactcaccagagaagttttggagataacttctaagtttact
actgatcctgtgaagattttggtcaaaaaggaagatgtcacgttggaaggaatcaaacag
tatcacatccagtgtgagaaagaggagtggaagttcgacacactttgtgatttgtacgat
tccttgacaataacgcaagcagtgattttttgcaacacaaagagcaaagtgaactggctt
gcagaccaacttcggaaagctaattttgctgtttcttcaatgcatggtgatatgaagcaa
gaggagcgagactcgatcatgaacgatttcagaactggtaattcgcgtgttttgatatcg
acagatgtatgggcacgtggaatcgatgtgcaacaggtttcattagttatcaactatgac
ttgcctctagacaaggagaactacgtgcatcgtatcggacgttcgggtcgttttggacgt
aaaggagtggcgataaacttaatcacaaaggatgatgttgctgaaatgaaggatttggaa
agatactacaagatccgtattagggaaatgccactggatttatccagcctttga
DBGET
integrated database retrieval system
