Clavispora lusitaniae ATCC 42720: CLUG_02803
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Entry
CLUG_02803 CDS
T01149
Name
(RefSeq) pre-mRNA splicing factor RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUG_02803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clu03041
]
CLUG_02803
03009 Ribosome biogenesis [BR:
clu03009
]
CLUG_02803
Enzymes [BR:
clu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUG_02803
Spliceosome [BR:
clu03041
]
Complex A
U2 snRNP components
U2 related factors
CLUG_02803
Complex B
CLUG_02803
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CLUG_02803
Ribosome biogenesis [BR:
clu03009
]
Eukaryotic type
90S particles
Helicases
CLUG_02803
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
AAA_30
AAA_23
T2SSE
Motif
Other DBs
NCBI-GeneID:
8498097
NCBI-ProteinID:
XP_002617359
UniProt:
C4Y2P0
LinkDB
All DBs
AA seq
766 aa
AA seq
DB search
MTINTFLPTMSKEDKKKYKKQKLMDSEAEKVAEAAEESLKKHPHPDSSGHLDFHDNGEFQ
GVQRHKTTAEIAQKLESGKINPFTGREFSQKYCDILRVRRDLPVHAQRDEFLRIFQSTQI
MVFVGETGSGKTTQIPQFVLYDDMPHLHGNQVACTQPRRVAAMSVAKRVADEMDVELGEE
VGYSIRFENKTSSKTVLKYMTDGMLLREAMEDHNLAKYSCIILDEAHERTLATDILMGLL
KQVTTRRPDLKLIIMSATLDAEKFQKYFNDAPLLAVPGRTHPVEIYYTPEYQKDYLDAAI
RTVLQIHATEEEGDVLLFLTGEEEIEDACRKIQLEGDELIREQGSGPLKVYPLYGSLPPH
QQQKIFEPAPVNTRPGGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVE
SLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQSYPEILRSNLASTVLEL
KKLGVDDLVHFDFMDPPAPETMMRALEELNYLQCLSDEGELTALGRLASQFPLDPMLAVM
LIGSPAFHCSEEILSIVALLSVPNVFVRPAAARKRADEIKMSFAHPDGDHLTLLNVYEAF
NSDDAYNVGLHQWCRDNFLSYRSLQSAKNVRSQLRRLMERHDLELNSTPYENPSYWDNIR
KALTAGFFMQVAKKKSGNKGFLTVKDNQDVLIHPSTVLAKENEWVIYNEFVLTSKNYIRT
VTNVRPEWLVELAPKYYNLEHFSKGDVRLSLERIIGRYEAMQRAGK
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgactatcaacacttttcttcccaccatgtccaaagaagataaaaagaagtacaaaaaa
caaaagctcatggactccgaggcagagaaagtggccgaggcagccgaggaatccttgaaa
aaacacccgcacccggactcttcgggccatttggacttccacgacaatggcgagttccaa
ggcgtccaaagacacaaaaccacggcggaaatcgcccagaagttggaaagcggcaagatc
aacccgttcacaggccgcgagttctcgcagaagtactgcgacatcttgcgtgtcagaaga
gacttgcccgttcacgcccagagagacgagtttttgcgcattttccagagcacacagatc
atggtgtttgtcggtgaaaccggttccggtaagacaacgcagatcccgcagtttgttctt
tacgacgacatgccccacttgcacggcaaccaggttgcgtgtacacagccaagaagagtg
gcagctatgtctgtggccaaaagagttgcagacgagatggatgtggagttgggcgaggag
gtgggttactcgatccgtttcgagaacaaaacgtcgtccaaaaccgtgttgaagtacatg
accgacggtatgttgttgcgtgaagccatggaggaccacaacttggccaagtactcatgt
atcatcttggatgaggcccacgagagaacgttggccacagacatcttgatgggtcttctc
aagcaggtgaccacgcgcagaccagacttgaagctcatcatcatgtcggccaccttggat
gcggaaaagttccagaagtacttcaacgacgcccctcttcttgccgtgcctggaagaacc
cacccggtcgaaatctactacactccggagtaccagaaggactacttggacgcggccatc
cgcacggttttgcagatccatgcgacggaagaggaaggtgacgttttgttgttccttact
ggagaagaagaaatcgaggacgcctgccgcaaaatccagttggagggagacgagttgatc
cgcgagcagggcagcgggcccttgaaggtgtatccgttgtacggatctttgcccccacac
cagcagcagaagatcttcgagcctgctcctgtcaacaccagacccggaggacggccaggc
agaaaagtcattgtgtcgaccaacattgccgaaacgtccttgaccatcgacggaattgtg
tatgtggtggacccaggcttctcgaagcaaaaggtgtacaacccaagaatcagggtggag
tctttgcttgtgtcgcccatttccaaagcttcggcgcaacaaagagctggtagagccggt
cgtacgcggcccggtaagtgtttccgcctctacacggaagaagcgttcaagaaagagttg
atcgagcagctgtatccggaaatcttgcggagcaacttggcctcgacggttttggagctc
aagaagttaggcgtggacgacttggtgcacttcgatttcatggatcctccagctccagaa
acgatgatgcgtgcgctcgaggaattgaattacttgcagtgtctttccgacgaaggtgaa
ttgactgcgttgggccgtcttgcgtcccagttcccgttggaccctatgttagcggtgatg
ttgatcggatccccagcattccactgctcggaagaaatcttgtcgatcgtggcgcttttg
tctgttcctaacgttttcgtgcgtcctgcggccgccagaaagagagccgacgagatcaaa
atgtcctttgcccaccctgatggcgaccacttgaccttgcttaatgtgtacgaagccttc
aactcggatgacgcatacaatgttggtttgcaccagtggtgtcgagacaactttttgtcg
taccggtcgctccagtcggcgaaaaacgtcagatcacagttgcgccgtctcatggaacgc
catgacttggagttgaactcaacgccatacgaaaacccatcctactgggacaacatccgc
aaggcgcttactgcgggctttttcatgcaagtggccaagaaaaagagcggcaacaagggc
tttttgaccgtgaaggacaaccaggacgtgttgatccatccgctgacggtgttggccaag
gaaaacgagtgggtcatctacaacgagtttgttctcacctcgaagaactacatccgtaca
gtaaccaacgttcgtccggaatggttagtggagttggcaccaaagtactacaacttggag
cactttagcaagggcgacgttcgcctctctttggaacgcatcattggacgatacgaggcg
atgcaacgggccggcaaatag
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integrated database retrieval system
