Clavispora lusitaniae ATCC 42720: CLUG_02971
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Entry
CLUG_02971 CDS
T01149
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLUG_02971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clu03019
]
CLUG_02971
03041 Spliceosome [BR:
clu03041
]
CLUG_02971
03009 Ribosome biogenesis [BR:
clu03009
]
CLUG_02971
03016 Transfer RNA biogenesis [BR:
clu03016
]
CLUG_02971
Enzymes [BR:
clu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUG_02971
Messenger RNA biogenesis [BR:
clu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CLUG_02971
Spliceosome [BR:
clu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CLUG_02971
Complex C
U4/U6.U5 tri-SnRNP related factors
CLUG_02971
Ribosome biogenesis [BR:
clu03009
]
Eukaryotic type
Pre-60S particles
Helicases
CLUG_02971
Transfer RNA biogenesis [BR:
clu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CLUG_02971
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
nSTAND3
ATG17_like
Motif
Other DBs
NCBI-GeneID:
8497750
NCBI-ProteinID:
XP_002617527
UniProt:
C4Y358
LinkDB
All DBs
AA seq
1066 aa
AA seq
DB search
MFRRYGCASHHFHTRKIHSSQPQTMDGDDLFDVFSEAPASVPEAPKQEKETRKRAASPNP
EPTIKKQTTAPAKVVPVVRDASEIEASREVAPSSGLLAPSENTEKTGLKLKHQVRHQVAI
PPDYPYIPIGEHKRKSEARTYPFTLDPFQDTAISCIDRDESVLVSAHTSAGKTVVAEYAI
AQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPDAGCLVMTTEILRSM
LYRGSEVMREVAWVIFDEVHYMRDKSRGVVWEETIILLPDKVHHVFLSATIPNAMEFAEW
IVKIHNQPCHVVYTDFRPTPLQHYLFPAAGDGIHLVVDEMGTFREENFQKAMSSISNNIG
DDPAATESRGKKNGQTFKGGNKDGKSDIYKIVKMIYMKRYNPVIVFSFSKRDCESLALKM
SKLDFNNDDERSALTKIFDNAISLLPEGDRELPQIKNILPLLRRGIGIHHSGLLPILKEI
IEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKGFRWVSGGEYIQMSGRAGR
RGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLE
SSFYQFQNASAVPVLEQQLQKLTLEYNSTKVDDEYLVKEYYDLKKQLKTYEEDVRSVVTH
PGHILPFLQPGRVIKIRVGEHDYGWGMVASFSKRTNKRNPSQTYTDHESYVVSVFVCTMF
VDSPVGLIKPFNPDLPEGIRPAQEGEKARAEYIPITLDSIQAISSVRLKIPEDFKSSSAK
RSMVRTLKDLPKKLPDGIPLMNPVDSMKIDDPDFKMLLRKIDVLEGKLASNPLHESDRIT
DLYAKFSQKMDIDAKIRETKEKILQAQAVIQLDDLRHRKRVLRKLAFVTANDIIELKGRV
ACEISTGDELLLTELIFNGTFNNLGPEQCAALLSCFVFQERAKEVPRLKPELAEPLKAMQ
DMATRLAKTYKDCKIEVVEKDYVESFRPELMEVTYAWCKGASFTQICKMTDVYEGSLIRT
FRRLEEMIRQMEAAAKTIGNVELQEKMEKAAELVHRDIVSAGSLYL
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgttccggaggtacgggtgtgcatctcatcacttccacactcgaaaaattcactcttca
caaccacaaaccatggacggagacgaccttttcgatgtcttttccgaggcaccagccctg
gtgccggaagctcctaagcaggaaaaggaaacaagaaaaagagctgcgtcccccaacccc
gagccgacgataaaaaagcaaacgaccgcccccgccaaagtggttccagttgttcgagat
gcatctgaaatcgaagcatcgcgagaggtggcgccgtcgagcggattgttggcgccttca
gaaaacaccgagaagaccgggctcaagttgaagcaccaggtgcgtcaccaggtggccatc
ccgcctgattacccatacattcctattggagaacacaagaggaaaagcgaggccagaacg
tatccgttcacgttggatccgttccaggatacggccatctcgtgcatcgacagggacgag
tctgtgttggtctctgcccacacgtcggcaggaaaaaccgtggtggccgaatacgccatt
gcccagtcgcttcgagacaagcagagagtcatctacacttcgcccatcaaggcgttgagt
aaccagaagtacagagagcttttggccgagttcggcgatgtcggtttgatgactggagat
gtcaccatcaacccggatgccggttgtcttgtgatgaccaccgagattttgagatccatg
ttgtaccgtggttccgaggtgatgcgagaagtggcgtgggtcattttcgacgaggtccat
tacatgcgagacaagtccagaggtgtcgtgtgggaagagaccatcatcttgctcccagat
aaggtgcaccatgtctttttgtcggcgacaattcccaacgcgatggagtttgccgagtgg
atagtgaaaatccacaaccagccgtgtcacgttgtgtacactgatttccggcccacaccg
ttgcagcactatttgttcccagctgcgggagacggaatccacttggtggttgacgaaatg
ggcactttccgtgaagaaaactttcaaaaggccatgtcgtctatttccaacaatatcggt
gacgatccagcagcgacagagctgcggggaaagaaaaacggccagactttcaaaggaggc
aacaaggacggcaaaagtgacatttataaaatcgtcaaaatgatctacatgaagagatac
aacccagtgattgtgttttcgttttccaagcgtgactgcgagtcgcttgccctcaaaatg
tccaaattggacttcaacaacgacgacgagcgcagtgcgcttactaagatcttcgacaat
gccatcagcttgctcccggagggggatcgcgaactccctcaaatcaagaacatcttgcca
ttgttgcgccgtggtatcggcattcatcactcgggcctcttgcctattctcaaggagatc
atcgagattttgttccaagagggtcttctcaaggttcttttcgccacagaaacattttcc
atcggtctcaacatgccggctaagactgtcgtgttcacctctgtgcgtaaatgggacggc
aaagggttccgttgggtttccggtggtgagtatattcaaatgtctggacgtgctggtcgg
agaggtttggatgaccgtggaattgtcattatgatgatcgacgagaaaatggagccgcag
gtggccaagggcatggtcaagggccaggctgaccgcttggactcggcgtttcacttgggc
tacaacatgattttgaacttgatgcgtgtggagggtatttctcccgagttcatgttggaa
agctcgttctaccagttccagaatgcctctgctgtgccggtgttagaacagcagctccag
aaattgactttggaatacaacagcaccaaggttgacgacgagtaccttgtgaaagaatac
tacgacttgaagaagcagttgaagacatatgaagaagatgtgcggctggtggtgacccat
ccaggccacatcttacccttcttgcaaccgggccgtgtgataaaaatccgtgtgggagag
cacgattatggttggggtatggtggcttcgttctcgaagagaacaaacaaaagaaaccca
tcgcagacgtatacggatcacgaatcgtacgttgtgagtgttttcgtatgcacaatgttt
gtggattcgcctgtggggttgatcaagccgttcaatcctgatcttcctgagggaatccgc
ccagcccaagaaggcgagaaggctagggccgaatacatccccatcacattggactccatt
caagcgatctcaagcgtgcggttgaaaatccctgaagactttaagagctcgctggcaaag
cgcagcatggttcggacgttgaaagatttgcccaagaaattgccagacggaattccgttg
atgaatcccgtcgacagcatgaaaatcgacgatccagacttcaaaatgctcttgcgcaag
atcgacgtgttggaaggaaagttggccagcaacccattgcatgagtcggaccgcatcacc
gacttgtacgccaagttttcgcagaagatggatattgacgccaaaatcagagaaaccaaa
gagaagattctccaggcgcaggcagtgatccagcttgacgatttgcgtcaccgcaaacgt
gtcttgcgtaagcttgcgtttgttacggcaaacgacattatcgagttgaaaggccgtgtt
gcatgtgagatctctacaggcgatgagctcttgctcacggagctcatcttcaacggtact
ttcaacaacttgggccctgaacaatgcgcagctctcttgtcgtgctttgttttccaagaa
cgggcgaaagaggtgccgcgcctcaagcctgagttggcggaacctttgaaggcaatgcaa
gacatggccacacgcttggcgaaaacgtataaggattgcaagatcgaagtagtggagaag
gactatgtggagctgttccggcccgagcttatggaagtgacatatgcctggtgtaaaggt
gccagctttacacaaatttgcaaaatgaccgatgtatatgaaggttcgctcatcagaacc
ttcagaagattggaggagatgatccgccagatggaggctgcggccaagacgattggaaac
gtcgagttgcaggagaagatggagaaagccgctgagttggtgcacagagacattgtttct
gctggctcgttgtacttatag
DBGET
integrated database retrieval system
