Clavispora lusitaniae ATCC 42720: CLUG_03468
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Entry
CLUG_03468 CDS
T01149
Name
(RefSeq) similar to RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03020
RNA polymerase
clu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLUG_03468
09124 Replication and repair
03420 Nucleotide excision repair
CLUG_03468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clu03021
]
CLUG_03468
03400 DNA repair and recombination proteins [BR:
clu03400
]
CLUG_03468
Enzymes [BR:
clu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLUG_03468
Transcription machinery [BR:
clu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CLUG_03468
DNA repair and recombination proteins [BR:
clu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CLUG_03468
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Salivary_glue
Motif
Other DBs
NCBI-GeneID:
8497227
NCBI-ProteinID:
XP_002616227
UniProt:
C4Y5N4
LinkDB
All DBs
AA seq
1402 aa
AA seq
DB search
MDQATKRPRDGGLNDPRLGSIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIK
KVCECVCMHCGKLLVDDTNPLMAQAIKIRDPKKRFNAVWNVCKTKMVCEADIINEEGEVT
SGRGGCGHTQPTVRRDGLKLWGTWKQNKSFDESEQPERRLLTPSEILSVFKHISSEDCHR
LGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADIIKANINVQRLEM
DGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLM
GKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG
AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVK
VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVM
GIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAIIKPKPLWSGKQILSMA
IPKGIHLQRFDDGNDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQV
CAQLFSSIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNR
LEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQM
SACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGR
EGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQ
SVDTIPGSDAKFEKRYRIDLLDPSKSISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRK
YLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVI
RGKSRLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIVHP
GEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYL
DPEIASDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDEK
VEETIDNQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRC
RVIRDPKLEEEGDHEEDQILKRVEAHMLESISLRGIPGITRVFMMQHKMSTPDESGEFSQ
KQEWVLETDGVNLAEVIAVPGVDSSRTYSNNFIEILSVLGIEATRSALYKEILNVIAFDG
SYVNYRHMALLVDVMTSRGHLMARTRHGINRAETGALMRCSFRRNGRDSFGCWCSCPSWD
DCRGISENVIFGSNASFRYWCI
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagcgacaaaaaggccaagagacggaggcttgaatgatcctagattaggttct
attgatcgtaatttcaagtgtcagacctgtggtgaagatatggccgaatgtcccggacat
tttggtcacatcgagttggcaaagcctgtattccacattggttttattgccaaaattaag
aaagtttgcgaatgtgtgtgtatgcattgtggtaagcttttggtggatgatactaaccca
ctaatggcccaggccattaagatcagagatccaaaaaagagattcaacgctgtgtggaac
gtctgcaaaacaaaaatggtttgcgaggctgatatcatcaacgaagaaggtgaagttacc
tctggaaggggaggatgtggtcatacccagcccactgttcgtagagacggtttgaaattg
tggggtacttggaaacaaaacaaaagtttcgacgaaagcgaacaaccagagcgtcgtttg
ttgactccgtcggaaattttgagtgttttcaaacacatcagctctgaagactgccataga
ttgggtttcaacgaagactatgcaagaccagagtggatgttaattacagttttgcccgtt
cctcccccaccagtgagaccttccattgctttcaacgatacggcaagaggcgaagatgac
ttgacatttaagttggctgatatcatcaaggccaacatcaatgtccagcgtcttgaaatg
gatggttcacctcagcatgtcatcagtgaattcgaagcattgttgcagttccacgtggcg
acttacatggataacgatattgctggtcaaccacaggcccttcaaaagacgggtcgtcct
atcaaatccattagagccagattgaagggtaaggaaggtagattgagaggcaacttgatg
ggtaagcgtgtggatttttctgctcgtactgtcatttccggtgaccctaatcttgatctt
gatcaggttggtgttccattgtcgattgcaagaaccttgacttatcccgaaatcgtcact
ccatacaatatccaccgcttaactgaatacgtccgcaatggtccaaacgaacacccaggt
gccaaatatgtcattcgtgatacaggagaccgtattgatttgagatacaacaaacgagct
ggtgatattgctttgcaatacggctggaaagtggaacgtcacttaatggatgatgatcca
gtgttattcaaccgtcagccctccttgcacaagatgtctatgatggctcatagagtcaaa
gttatgccgtactccacatttagattgaacttgtctgtcacatcgccatacaatgcagat
ttcgatggtgatgaaatgaacttgcatgttccacaatcgcaggagacaagagctgaattg
tcccaaatttgtgctgttccattgcagatcgtttctccacaatccaataagcctgttatg
ggtattgtgcaagataccttgtgtggtattcgtaaaatgacgttacgtgatattttcatt
gagtacgagcaggtgatgaacatgttgtattggattccaaactgggacggtgttatacca
cctcctgcaattatcaaacccaagcctttgtggtccgggaaacaaatcttgtcgatggct
attccaaaaggtattcacttacaaagatttgacgatggcaatgatatgctcagtcctaag
gataaaggtatcttgattgttgatggtgaaattatctttggtgtcgtcgataagaaaaca
gtcggtgccactggtggaggtttgattcataccgtcatgagagaaaagggttcacaagta
tgtgcacaattattcagttccatacagaaggttgtgaactactggcttttgcataatggt
ttctccattggtataggtgatactattgccgataaagataccatgagggatgttaccaca
acgattcaagaggctaaacaaaaagtgcaagaaattattatggacgcacagcagaataga
ttagaaccagagcctggtatgacattgagagaatcgtttgagcacaatgtttctcgtgtt
ttgaaccaggctcgtgatacagctggtcgttcggcagaaatgaacttgaaggacttaaac
aatgtgaagcagatggtcacatctggttccaagggttcgtttattaatatctcccaaatg
tcggcgtgtgtgggtcagcaaattgtcgaaggtaaacgtattccatttggtttcgcagac
cgtactttgccacatttcactaaagatgactactctcctgagtctaagggtttcgtggaa
aactcgtatttgagaggcttgacccctcaagagtttttcttccacgccatggctggtaga
gagggtcttattgatactgctgtcaagactgcagagactggttacattcaacgtcgtttg
gtcaaggctttagaggatattatggtccattatgatggtacaactagaaactccttgggt
gatatcattcaatttgtctatggtgaagacggtattgatggtactgctgtcgaaaagcaa
tcagtggataccattccaggttcagatgctaagttcgagaagcgttaccgtattgacttg
ctagatccaagtaagtccatttccgaatctttacttgattcaggaaaggagattaagggt
gatgtgaagttgcagaaggttttggattcagaatacgaacagttgcttaaggatcgtaag
tacttgagagaggtatgttttccaaacggtgacttcaactggcctttacctgtcaacttg
cgtcgtattatacagaatgctcagcagattttccatagtggtcgtcaaagagcctctgat
ttgaagcttgatgagattgtcgaaggcgttaaagctctctgcagcaagcttcttgtgatc
cgtggtaagtctcgtctcgcgaaggaagcacaggaagatgcaacattgttgttccaatgt
cttgttcgttcaagattagcagcacgcagaattatagaggagtttaaattgagcagaatc
tcttttgaatgggtttgtggtgaaattgagactcaattccagaagtcgattgttcaccca
ggtgaaatggttggtgttattgccgcacaatctatcggtgaaccggctacacagatgacg
ttgaatacattccattatgccggtgtgtcgtccaagaatgttacattgggtgttcctcgt
cttaaggaaattcttaacgtggcaaagaacatcaaaacaccggcacttactgtgtactta
gatcccgagatcgcatcagatattgagaaagccaaggttgtgcagtctgcgatcgagcac
acgacgttgaagaatgtcacttctgctactgaaattttctacgatccagatccaagaagc
acagttattgaagaggattacgatactgtcgaagcttactttgctattccggatgaaaag
gttgaagaaacaattgacaatcaatctccatggttgcttcgtcttgaattggacagagct
aaaatgttggacaagcagttgacaatggcccaagttgcagagaagatttctcaaaacttc
ggtgaagatttgttcgttatttggtctgatgatactgctgataaattgattatccgttgt
cgtgttatccgcgatccaaaattggaagaagagggtgaccacgaggaagatcaaatcttg
aagcgcgtggaagcacatatgctcgagtctatctcattacgtggtattccaggtatcacg
agagttttcatgatgcaacacaagatgagcactcctgatgaaagcggtgaattttcgcag
aaacaggagtgggttttagaaactgatggtgtgaacttagctgaagtcattgccgtacct
ggtgtggattcttctcgtacctactctaacaatttcattgaaattttgtctgtgttgggt
atcgaggctacacgttccgccttgtacaaggagattcttaatgtcattgctttcgatggt
tcttatgtgaactaccgtcatatggcgttgttagtcgatgttatgacttctcgtggccac
ttgatggcaagaacacgtcacggtatcaacagagcagaaactggtgctttaatgagatgt
tcttttcgaagaaacggtcgagattcttttggatgctggtgcagctgcccgagttgggat
gattgtcgtggtatttctgaaaacgtcatctttgggtcaaatgcctcctttaggtactgg
tgcatttga
DBGET
integrated database retrieval system
