Clavispora lusitaniae ATCC 42720: CLUG_04890
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Entry
CLUG_04890 CDS
T01149
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
clu
Clavispora lusitaniae ATCC 42720
Pathway
clu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CLUG_04890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clu03041
]
CLUG_04890
Enzymes [BR:
clu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CLUG_04890
Spliceosome [BR:
clu03041
]
Complex C
Other components
Step II factors
CLUG_04890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
S1
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
Flavi_DEAD
ATPase
AAA_16
AAA_11
SRP54
CIS_TMP
Motif
Other DBs
NCBI-GeneID:
8495351
NCBI-ProteinID:
XP_002614875
UniProt:
C4Y9K0
LinkDB
All DBs
AA seq
1131 aa
AA seq
DB search
MVGWLKYVDSISIACTWPYNHLMAMRLNFMSGPLLKKVAAAVEKHLGVADSDETLSRFLL
SLYEEPLEAFSRAVEANGGSDFPPAFVHEVFEAIREESKSKESKESKSKESKDGSKREEQ
VETEPENQVHEKPAETQRERLPSERSKDTGTEQRTQKDHNNQHQSHQNQNQNHQHQNHQN
HQDQQNQNQQNQQNLHAPEPNLVVGAVCRGTVSNITSYGAFVRLNRFESGLCHISKMSYD
GRRVGSPGDVVKQNQEVFVRITDVGSGRRRKIALSMVGVDQTNGEYVEGRESGRQSGRDT
EFGRRGREMGRDRAVSSGARRLTSPERWEIRQLIAAGAARASDYPELYEVEEDPAESEGF
EVEINPHEPKFLQGQVRARAEPAHILKNPEGSLSRAAMDGSRLAQEMREQKKEQRKKEKQ
QGTEEKNKDKEQNKDKEQSKGKEQAPYSKSRKNVSKSDLAQSRKRLPVYAMREQLLSAVR
DNQFVIVVGETGSGKTTQIVQYLYEENFHRGDKIIACTQPRRVAAESVAKRVAQEVGCPL
GQEVGYTIRFDDRTSPATRIKYMTDGMLQREALLDPQMSKYAVVMLDEAHERTVATDVLF
ALLKKAARANPDLRVLATSATLDADKFSRYFGGCPVLHVPGRTFPVEIMYSREPEPDYVA
AALDCVMQIHVAEDSGDILVFLTGQDEIDTCCEALEARIKTLGRAVPELLVLPAYSALPP
DQQARIFEPAPPGARKVVLATNIAETSITIDGIRYVVDPGFVKLNAYDPRLGMDSLVVSP
ISQAQANQRSGRAGRTAPGKCFRLYTEEAFRTEMRPNTVPEIQRQNLEHTILMLKAMGID
DVLRFEFMDPPPAPTTVQALKELYVLDALDENGHLTSMGRRMADFPMEPALAKTVLASVD
LSCASDVLSVVAMLSVQNVFYRPKDKQAAADQRKQRFHSVHGDHLTLLNVFRGWEQSGRS
RSWCAENFVQERAMWRAFEVRKQLAAIMVRFRLDVHGSDASAVRKAFCAGYFRNSAKRDP
HEGIFTTLVDQTPVHLHPSSAVYGKSVDYVIYHTLLLTTKEYMHCVSVVDPKWLVELAPR
FFQPSDPNNPSERRKRQKIVPLFNRFAENQDSWRLTAQVEEKKRALGRLNQ
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggttggttggttgaaatatgtagactctattagtatcgcctgcacctggccatataac
catctcatggcgatgcgcctaaacttcatgtctggccctcttttgaaaaaagttgccgcc
gccgtcgaaaaacatttgggcgtggccgactcggacgagacgctctcgcggtttcttcta
agtttgtacgaggagccgttggaggcgttttctcgggcggtcgaggccaatggcggaagc
gactttccgcccgcgtttgtgcacgaggttttcgaggcgataagagaggagctgaaactg
aaagaactgaaagagctgaaactgaaagaactgaaagacggactgaagagagaagaacaa
gtggagacagagccagagaaccaggtgcatgaaaaaccagcggaaacgcaaagggaaagg
ctaccgtctgaaaggtccaaagacactggcacggagcagagaactcaaaaggatcacaac
aatcagcatcagagtcatcagaatcagaatcagaatcatcagcatcagaatcatcagaac
catcaagatcagcaaaatcagaatcagcaaaatcagcaaaatctacacgcccctgagcca
aaccttgtggtcggcgccgtctgccgcggaaccgtatccaacatcacgctgtatggcgct
ttcgtccgcctcaaccggttcgagtcgggcctctgccacatcagcaaaatgctgtacgat
gggcgccgcgtgggtctgcccggcgacgttgtgaagcagaaccaggaggtttttgtgcgg
atcacagacgttggctcgggccgccgccgcaaaatcgccctttccatggtgggcgtcgac
cagaccaacggcgagtatgtcgaggggcgagagtcggggcgacagtcggggcgcgacacc
gagtttgggcggcgcggccgagaaatggggcgcgaccgcgctgtttcttcaggcgcgcgc
cggctcacgtcgcccgagcgctgggaaatccgccagcttatcgccgccggcgcggctcgc
gcctcagactaccccgagttgtacgaggtcgaggaagacccggccgaaagcgagggcttt
gaagtggagatcaatccgcacgagccaaagtttttgcagggccaggtgcgggcgcgagcc
gaaccggcgcacattctcaaaaaccccgagggctcgttgtctcgggccgcgatggacggg
ctgcggttggcccaggaaatgagagagcagaagaaggagcagagaaagaaggagaagcag
cagggcaccgaagagaagaacaaagacaaagaacagaacaaagacaaagaacagagcaaa
ggcaaagaacaggctccatactccaagtctagaaaaaatgtttccaagtccgacctcgct
cagctgcgcaagcggcttcccgtctacgccatgcgcgaacagctcctctcggccgttcga
gacaaccaattcgtcattgtggtgggcgagaccggttcgggcaaaacgacccagatcgtc
cagtatctctacgaagaaaacttccaccgcggcgacaagatcattgcatgcacccagccg
cggcgtgtggcggccgagtccgtggcgaagcgtgtggcccaggaagtcgggtgtccgcta
ggccaggaggtgggatacaccattcgtttcgacgaccgcacgtcgcccgcgaccagaatc
aagtacatgaccgacggtatgcttcagcgcgaggcgttgctcgacccgcagatgctgaag
tatgcggtggtgatgttggacgaggcgcacgagcggactgtggccaccgatgtgcttttc
gctttgctcaagaaggcggcgcgggccaacccggaccttcgtgttctcgccacgtccgcc
acgcttgatgccgacaagttctcgcgctattttggcggctgccctgtgcttcatgttccc
gggcggacttttcccgttgaaatcatgtactcgcgggaaccagagcccgattacgtggcc
gcagctcttgactgtgtgatgcagatccacgtggccgaagactcgggcgacattcttgtg
tttcttaccggtcaggacgagattgacacctgctgcgaggcgctcgaggcccgtatcaag
acgttgggccgtgccgtgccggaacttctagttttgcctgcctactcggctttgcctcct
gaccaacaggcacgaatcttcgagccggcgccgcctggcgcccggaaagtggtattggct
acaaatatcgccgaaacgtccatcaccatcgatggcatccgctatgtggtagacccgggt
tttgtcaagctcaacgcctacgacccgcggcttggaatggacctgttggttgtgtcgccc
atttcgcaggctcaggccaatcagagaagcggaagagcaggcagaacagcaccaggcaag
tgtttccgtctctacacggaagaggctttccgcacagaaatgcggccaaacactgttccc
gagatccagagacagaacttggagcacaccatcttgatgctcaaggcgatggggatcgat
gatgtgctccgattcgagttcatggaccctcctccggctccaaccacagtacaggcgttg
aaagagctctatgttcttgatgcgctcgacgaaaacggccatctcacctcgatgggccgc
cgcatggccgatttcccgatggagcctgcgcttgcgaaaacggtcctagccagtgtggat
ctttcgtgtgcttcggacgttttaagcgtggtggccatgttatcggtgcagaatgtgttt
tatcggccaaaggacaaacaggccgccgcagaccagcgaaaacagcgtttccatagtgtc
cacggcgaccatctcactcttttgaatgttttccgtggctgggaacaatcaggtcgctcg
cggtcgtggtgtgccgagaattttgtccaagaacgagccatgtggcgagcttttgaagtt
cgcaagcagctcgcggccattatggtgcggtttcggcttgatgtccatggatcggacgcc
tctgctgtccgcaaggcgttttgtgcgggctacttccgcaatctggcgaagcgagacccc
cacgaaggaatctttactactttggtcgaccagaccccagtgcatttgcatccgctgctg
gcagtgtatgggaaaagtgtggactatgtgatttaccacacacttcttctcactacaaaa
gagtatatgcattgtgtcagtgtcgttgatccaaaatggcttgttgaattggcgccgcgg
ttcttccagcctagcgaccctaataacccgagcgaacggcgcaagaggcagaagattgtt
ccactcttcaatcggtttgctgaaaaccaggactcttggaggttaactgcacaagtggag
gaaaagaaacgggccttggggcgtttgaaccagtga
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integrated database retrieval system
