Canis lupus dingo (dingo): 112640232
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Entry
112640232 CDS
T08371
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
clud
Canis lupus dingo (dingo)
Pathway
clud03440
Homologous recombination
clud03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112640232 (PALB2)
03460 Fanconi anemia pathway
112640232 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clud03400
]
112640232 (PALB2)
DNA repair and recombination proteins [BR:
clud03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
112640232 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
112640232 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
112640232
NCBI-ProteinID:
XP_025271950
Ensembl:
ENSCAFG00020021359
LinkDB
All DBs
Position
6:22076085..22104231
Genome browser
AA seq
1254 aa
AA seq
DB search
MQLARWGRRAALACASWWRAGGAPRFLPGRPRAQGRPRLPASPGPGVGDGCSFRSAAGPM
EEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKFKNSIKKTAEEHDCLLQQ
DTLPQLNHSESKNKVSPCDTLQISTHLDEETGEKTPVTFDIEPESFNPEHGSVEELHIQR
TGDIQEHFPYWVGGPGVEKRQSKLPGRRKKQQKRTFTSQARDSLFDTDSLILSGKRLKEQ
EENNGENPRTPITKRTYLSSSMSDIPGSPSPVMETNVRGILIPPTAKPQRDVDALVRGNN
FPMVPTLASFTLSNSSSSHHLEHKPPKDDWELITHSLKNINPASPVNLEAQVKKITVSKD
NPGISASGQLPQSPDLEPDNSCSPNKLIYDNLSADENQNLKGQNHTEESLKFPHNTLDGR
NESLQENEVLSQSKSLSPEVISPASTENQTYSCTVLEGLLFPAEYYVRTTRRMSNCQRKV
ALEAVIQSHLGVRKKEFKNKSKDATKNLNLCSEETDQSEIRTSDTCTKQSSSRRSQKHRS
LTEVHSPTGPTEDNLPRKAVTQPSGGRHRRKRKSICPPVLDHHELLLPTPSTSGVNRSKK
EITLHKDQNEKVIIQGKKDHCQKEDSLSSRKNGYLALDSAVFKASFHENEMLSLKQLSSF
LKTTDFQLPDEIFGPLKLEKLKSYSEKTVEPIVSKMYAQKHLKEGNCIVLEELTPTQIDT
EMKDLEEEILVLPEKAQPKMPSLTSRSQKKGLSSSILLFTPLNTSAPENSNRPTADMCSP
TFPILGTTPAFGSQALSEKVCTETVRPTCSTPQLPHLKDSDHVLASAAHTLKDSDQKQLD
NWTNLSKPGGTLVVSGRDGQPSCDCDSGPQATPLPTESVPFKDNQLCGNPQPESWKQSTE
QEQSASLTEVAELPACQSSNPGHLQLVSKLKNPSGSCSVDVSAMWWEIAGFKEPCIITAC
EYVVSLWKPLNTLQWEKLYSWHFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRSLLCSS
DGKREKQVLLSSGNIKAVLGLTGRRLVSSSGTLCDQQVEIMTFAEDGRSKEKQFLMPPEE
TVLTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIGDRYQASVCRKAYSEMGLLF
VVLSHPCAKESELLGSPVFQLIVINPKTTLSVGVMLYCLPQGQAGRFLEGDVKDHFAAAV
LTSGTIAIWDLLLGHCTALLPPISDQHWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggccaggtggggacggcgcgcggcgctcgcatgtgcaagctggtggcgcgcc
gggggtgcgccccgtttcctgcccgggcgcccaagggcccagggtcggccccggctccct
gcgtccccaggcccgggggttggcgacggctgctccttccgttcggccgccggcccgatg
gaggagcctcctgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaatta
gcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgctcaaagagct
gagaagtttaagaattctattaagaaaacagcggaagaacatgattgcttgcttcagcag
gatactttaccacagctaaaccactcagaatctaaaaataaagtatctccttgtgacaca
ttgcaaattagcactcatctggatgaagaaactggagaaaagacacctgtcacatttgac
attgagcctgagtccttcaaccctgaacatggctctgtggaagaattacatatacaaaga
acaggtgatatccaagaacattttccctactgggtcggtggccctggtgttgagaaaagg
cagagtaagctgccagggagaagaaaaaagcagcagaaaagaacatttacttcacaggca
agagactctttgtttgacacagattcactcatactgtctggaaaaagactaaaggaacag
gaagaaaacaatggagaaaatcctaggacacctataactaaaagaacttacctttcaagt
tctatgtctgacattcctggttctccatcaccagtgatggaaactaatgtaaggggtata
ttaattccaccaactgccaaaccacaaagagatgttgatgcactcgtaagaggaaataat
ttccccatggtgcctacacttgcttcatttactctatcgaatagcagtagcagtcatcac
cttgaacataagcctcctaaagatgactgggaacttattactcacagtttaaaaaacatt
aaccctgcttcacctgtaaacctagaggcacaagtgaaaaaaattacggtctctaaagat
aacccaggtataagtgcaagtggccagctgcctcaaagtcctgacttagagccagataat
tcatgctctccaaataaactcatttatgataacttatcagcagatgaaaaccaaaactta
aaaggacagaatcacacagaagagtctttaaaatttccccataacactcttgatggtaga
aatgaaagtcttcaggaaaatgaggttttaagtcaatctaagagtcttagcccagaagta
atctctcctgcttctacagaaaatcaaacatattcttgcacagtgcttgaaggccttcta
tttcccgcagaatattatgttagaacaacacggcgcatgtcaaattgtcagaggaaggta
gccctggaggctgtaattcaaagtcatttgggtgtcagaaagaaagagtttaaaaataaa
agtaaagacgcaactaaaaatttaaacctttgcagtgaagagactgaccagagtgaaatt
aggacttctgacacatgcacaaaacaatcaagttcaagaagatctcaaaaacatcggtcc
ttaactgaagtccactctcccactgggccaactgaagataaccttcccaggaaggcagtt
acccagccatctggtggaagacacagaagaaaaagaaagtcaatctgcccacctgtatta
gatcatcatgaactacttttgccaactcctagcacatcaggtgttaatagatccaagaaa
gaaatcaccttacacaaagatcagaatgaaaaagtaattattcaggggaagaaagatcac
tgtcaaaaagaagactccctttcttccagaaagaatggttatctagctttggattctgct
gtgttcaaggcttcatttcatgagaatgagatgctaagtttaaagcaactgtcatctttt
ctcaaaaccacagactttcagttacctgatgaaatctttggacctcttaagcttgaaaaa
ctgaagtcctattcagaaaaaacagttgagcctattgtatcgaaaatgtatgcacagaag
catcttaaggagggaaactgtattgttttggaagaattgactcctacacaaattgatact
gaaatgaaggacttggaagaggaaattctggttctcccagaaaaagcacaacctaaaatg
ccaagcctaacaagccggtctcagaagaagggtctttcttcatccatattacttttcact
cctttaaataccagtgcccccgagaacagtaacaggccgacagcagacatgtgttcgccc
actttccccatcttaggcacaactccagcttttggctcccaagcactcagtgaaaaagtg
tgcacagagactgtcagaccaacttgctctacaccccaacttcctcacttaaaagacagt
gatcatgtgctcgcttcggcagcacatacactaaaagacagtgatcagaaacaactcgac
aattggaccaacctgtcaaaaccaggtggcaccctggttgtgtcaggtcgagatggacag
ccttcctgtgactgtgattctggtccccaggcaacacctcttcccactgagtcggtccct
ttcaaagacaaccagctgtgtggaaatccccagccggagtcatggaaacagtccactgaa
caggaacaatctgcttccctgactgaagtagcagagcttcctgcttgtcaaagctcaaac
ccaggccacctccaattggtttcaaagttaaagaatccttctggttcctgttcagtggat
gtgagtgccatgtggtgggaaatagcgggtttcaaagagccatgtatcataactgcctgt
gaatatgtagtttctctttggaaacctctcaatactttgcagtgggaaaaactttattcc
tggcactttacagaggttccagtattacagatagttccagtgcccgatgtttgtaatctc
gtgtgtgtggctttgggaaatttggagatcagagaaatcaggtcattactttgctcctct
gatggtaaacgtgaaaagcaagtactactgagttctggaaatataaaagctgtgcttggc
ctgacagggaggaggctagtcagtagcagtgggaccctttgtgaccaacaagtagaaatc
atgacttttgcagaagatggaagaagcaaagaaaaacaatttttgatgccccctgaagag
actgtattaacttttgccgaggtccaagggatgcaggaagctctgcttggtactactata
atgaacaacattgttatttggaatttaaagactggtcagctcctgaaaaagatgcacatt
ggtgatcgctaccaagcttcagtttgtcgcaaagcctattctgaaatggggctcctgttt
gttgttctgagtcatccttgtgccaaagagagtgagctgttgggaagccctgtgtttcag
ctgatcgtgattaaccctaagacaactctgagtgtgggggtgatgctgtactgtcttcct
caagggcaggctggaaggttcctggagggggacgtgaaagatcattttgcagccgcagtg
ttgacttctggaacaattgccatttgggacctacttctgggtcattgtaccgctctcctc
ccacctatctctgaccagcattggtcctttgttaaatggtcaggtacagattctcatttg
ctggctggacaaaaagatggaaatatatttgtataccgctactga
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integrated database retrieval system
