Canis lupus dingo (dingo): 112641284
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Entry
112641284 CDS
T08371
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
clud
Canis lupus dingo (dingo)
Pathway
clud03013
Nucleocytoplasmic transport
clud03015
mRNA surveillance pathway
clud03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
clud00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112641284 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
112641284 (DDX39B)
03015 mRNA surveillance pathway
112641284 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clud03019
]
112641284 (DDX39B)
03041 Spliceosome [BR:
clud03041
]
112641284 (DDX39B)
Enzymes [BR:
clud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112641284 (DDX39B)
Messenger RNA biogenesis [BR:
clud03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112641284 (DDX39B)
Spliceosome [BR:
clud03041
]
Complex C
Other components
EJC/TREX
112641284 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112641284 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112641284
NCBI-ProteinID:
XP_025273936
Ensembl:
ENSCAFG00020020530
UniProt:
A0A8C0L8B6
LinkDB
All DBs
Position
12:complement(1125565..1138297)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgatgtggacaatgaactcttggactatgaagaagatgaagtagagaca
gcagctgggggagacgggtctgaggcccctgccaagaaggatgtcaagggttcctacgtc
tccatccacagctctggctttcgtgacttcctgctgaagccagagttgctccgggccatt
gttgactgtggctttgaacatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctatgccaggccaagtcagggatgggaaagacagcagtgtttgtg
ctggccacactacaacagttggagccagttactggacaggtgtctgtgctggtgatgtgt
cacacccgggagttggcatttcagatcagcaaggagtatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcggtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaattgcccgcatattgttgtggggacccctggccgcatcctcgccctggct
cgaaataagagcctcaatctcaaacacattaaacactttatcttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcctgtctgccgc
aagttcatgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtccttgagttcaatcaggtggtgatctttgtgaagtctgtgcagcgttgc
attgccctcgcccagctgctggtagagcagaacttcccagccattgccatccaccgaggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctatttggccgaggcatggacattgagcgggtgaacattgccttc
aactatgacatgcctgaggattctgacacttacctgcatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacatttgtatcagatgaaaatgatgccaagatcctc
aatgatgtgcaggatcgctttgaagtcaatattagtgagctgccagatgagatagacatt
tcctcttacattgaacagacgcggtag
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integrated database retrieval system
