KEGG   Canis lupus dingo (dingo): 112666432
Entry
112666432         CDS       T08371                                 
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
clud  Canis lupus dingo (dingo)
Pathway
clud03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:clud00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112666432 (XAB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clud03019]
    112666432 (XAB2)
   03041 Spliceosome [BR:clud03041]
    112666432 (XAB2)
Messenger RNA biogenesis [BR:clud03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     112666432 (XAB2)
Spliceosome [BR:clud03041]
 Complex B
  Other components
   Prp19-related factors
    112666432 (XAB2)
 Complex C
    112666432 (XAB2)
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 TPR_12 TPR_2 TPR_8 Suf TPR_19 TPR_15 ARM_TT21 ARM_TT21_C TPR_NPHP3 TPR_1
Other DBs
NCBI-GeneID: 112666432
NCBI-ProteinID: XP_025313133
Ensembl: ENSCAFG00020022886
LinkDB
Position
20:complement(52688926..52702456)
AA seq 855 aa
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIGRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPSRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq 2568 nt   +upstreamnt  +downstreamnt
atggtggtgatggcgcgtctgtcccggcccgagcggccggacctagttttcgaagaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaagtgctggcttcgc
tacattgagttcaagcaaggtgccccgaagcccaggctcaatcagctgtatgagcgggca
ctgaagctgctgccctgcagctacaaactctggtaccggtacctaaaggcacgccgggca
caggtgaagcatcgctgtgtgactgaccccgcctatgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcataagatgccacgtctgtggctagactattgccaattcctg
atggaccagggccgcgtcacacacacccgccgtacgtttgaccgtgccctccgggcgctg
cccattacacagcactctcgcatctggcccctgtacctgcgcttcctccgctcacaccca
ctgcctgagacggctgtgcggggctaccggcgctttctcaaactcagccctgagagtgca
gaggagtacatcgagtacctcaaatccagtgaccggctggacgaagctgcgcagcgcctg
gccaccgtggtgaatgatgagcgctttgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgtgacctcatctcccagaacccagacaaggtgcagtcactcaacgtg
gatgccatcatccgtggaggcctcactcgcttcactgaccagctaggcaagctctggtgc
tcgctagctgactactacatccgcagtggccacttcgagaaggctcgagatgtgtatgag
gaggccatccggaccgtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagccaagatggagacagcctcagaactggggcgtgag
gaggaagatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattggccgg
cggcccctgctcctcaacagcgtcttgctacgccagaacccgcaccatgtacacgagtgg
cacaagcgcgtggccctgcaccaggggcgcccccgggagatcatcaacacatacacggag
gctgtgcagacggtggaccctttcaaggctacaggcaagccccacacactgtgggtcgca
tttgccaagttttatgaagacaatgggcagctggacgatgcccgcatcatcctggagaag
gccaccaaggtgagcttcaaacaggtggatgacctggccagcgtgtggtgtgagtgtggc
gagctggagctccggcacgaaaactacgatcaggccttgcggttgctgcggaaggccact
gcactgcccgcccgacgagccgagtacttcgatggctcggagcctgtgcaaaaccgtgtg
tacaagtcactgaaggtgtggtcgatgctcgccgacctggaggagagcctaggcaccttc
cagtccaccaaggctgtatacgaccgcatcctggacctacgcatcgccacaccccagatc
gtcatcaactatgccatgttcctggaggagcataagtactttgaggagagcttcaaggcg
tatgagcgtggcatctcattgttcaagtggcccaacgtgtctgacatctggagcacctac
ctgaccaaattcatcgcccgctatgggggccgcaagctggagcgagcacgggacctcttt
gaacaggcgctggacggctgccctcccaaatatgcaaagacattgtacctgctgtacgca
cagctggaggaggagtggggcttggcccggcacgccatggccgtgtatgagcgtgccacc
agagccgtggagcctgcgcagcagtatgacatgttcaacatctacatcaagcgtgcagcc
gagatctatggagttacccacacccgcggcatctaccagaaggccatcgaggtgctgtca
gacgagcacgcccgggagatgtgcttgcggttcgcggacatggagtgcaggcttggcgag
attgaccgtgcgcgtgccatctacagcttctgctcccagatctgcgaccccaggaccact
ggcgctttctggcaaacatggaaggacttcgaggtccggcacggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtgcaggccacatacaacactcaggtcaatttc
atggcctctcagatgctcaaggtgtcaggcagcgccacgggcaccgtgtcagacctggcc
cccgggcagagtggcatggatgacatgaagcttctggaacaacgggcagagcagctggcg
gctgaagctgagcgggatcagccctcacgggcccagagcaagatcctgtttgtgaggagc
gatgcctcccgggaggagctggctgagctggcgcagcaagccaaccccgaggagattgag
ctgggtgaggatgaggatgaggacgagatggacctggagcccaacgaggtgcggctggag
cagcagagtgtgccggccgccgtgttcgggagcctgaaagaggactga

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