Canis lupus dingo (dingo): 112669231
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Entry
112669231 CDS
T08371
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
clud
Canis lupus dingo (dingo)
Pathway
clud04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
clud00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
112669231 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
clud04147
]
112669231 (COL18A1)
00535 Proteoglycans [BR:
clud00535
]
112669231 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
clud00536
]
112669231 (COL18A1)
Exosome [BR:
clud04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112669231 (COL18A1)
Proteoglycans [BR:
clud00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112669231 (COL18A1)
Glycosaminoglycan binding proteins [BR:
clud00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112669231 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112669231
NCBI-ProteinID:
XP_048960607
LinkDB
All DBs
Position
31:38827861..38869133
Genome browser
AA seq
1732 aa
AA seq
DB search
MARHPGRCLLLLLLLTCCPAAAQVDLLSLNWLWSTRTARPTAEPVSEAPGSPHVQPRDET
GTPVTPQPGPTEQGNAPASPEPPLRGLETDEHAASAAPSAPPAGPDPKEEKEENIAGVGA
KILNVAQGIRSFVQLWDDTTRPESSSTAGTPAPVTPTSPLALPGPSRPPPENGTALWLGS
TDAPRVEASTLPAPTRLPPSLDRPRAALREPSGPPPSPGRASLSSAPRGAPPGGIQPSPG
PPQDLDGEGLRPGLQHRLPGLRGRSPHLLPLVMGALGADAAPSALSSDPPALLPGTPLSA
VTGGRGAWAAPTADSLGPGPANNSAPLTPTGRCLPLPPALPVCGRLGIGRAWLPNHLQHA
SRDEVRAAARAWGGLLRTRCHRFLARFVCLLLAPPCRSGPPPAPPPCRQFCEALEDACWS
HLPGAGLPVPCASLPAQEDGLCVFIGPGAESRGLEVGLLQLLGEPPPQQVTQVDDPDVGP
AFVFGPDANSGQVARYHVPSPFFRDFSLLMHVRPATEGPGVLFAITDAAQAVVSVGVKLS
GVRDGQQHVQLLYTEPGAARTRTAASFRLPAFTGQWTRLALSVDGATVALFVDCELFQRV
PLERSPGGLQLEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHCLEEDDDDSGG
VSGDFGSGLEDYREPSVSAGGRLPGVLPVWPGLLPKAELPEAPPVTSPPLAGGRDVEDSR
MEEIEEEATASPLGARTLPGSATVAAESAQRLGGSLQEAPTGPAAHNPEAWPGPGPQGPP
GPPGPPGKDGTPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDVGPKGEKGDPGVGPRGPPG
PQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFG
MNSSDVPGPAGLPGVPGRDGPPGLPGAPGPPGPPGKEGGPGKPGPKGSPGDAGAPGPKGS
KGDPGPIGVPGESGLAGPPGPAGPPGPPGPPGPPGPGLAAGFVDMEGSGEPFWSTAHGAS
GPQGPPGLPGVKGDPGIVGPPGAKGEVGADGPPGFPGLPGREGTAGAQGPKGEKGTQGEK
GEPGRDGVGQPGLPGPPGPPGPVVYVSEQERAATGVPGPEGRPGHAGFPGPAGPKGDLGS
KGQRGPPGPKGEKGEPGPAFSPDGSMLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPG
RPGRPGMNGLKGEKGEPGQASAGFGMTGPPGPPGPPGPPGPPGTPVYDSNAFMEPGHPGP
PGLPGHQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGAEMKGEKGDRGDAGQKGERGEPGG
GGFFGSSVPGPPGPPGYPGIPGPKGESVQGHPGPPGPQGPPGIGHEGRRGPPGPPGPPGP
PGPPSFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPDVPEGWLM
FVAEREELYVRVRNGFRKVLLEARVPLPRGTDNEVAALQPPVVQLHEGNPYPRREPTHAT
ARPWRADDILASPPRLLDPQPYPGAPHHGSYVHFQPARPTGGPVHTHTHTHQDFQPVLHL
VALNSPQPGGMRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRTGVPVV
NLRDEVLFPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPRKSVWHGSDPSGRRLTD
SYCETWRTEAPAATGQASSLLAGRLLEQEAASCRHAFVVLCIENSVMTSFSK
NT seq
5199 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccaccccggccgctgcctgctgctgctgctgctgctcacctgttgccctgcg
gccgcccaggttgacctactgagcctgaactggctgtggtccactaggaccgccaggccc
acggccgaaccggtgtcggaggccccggggagcccacatgtgcagcccagagacgagacc
ggcacgcctgtgaccccccagcccggccccacggagcagggcaatgcccccgccagcccg
gagccgcctctgcgggggctggagaccgacgagcacgcggcctccgccgcaccctctgcc
ccccccgcgggcccggacccgaaggaggagaaggaggagaacatcgccggcgtgggagcc
aagatcctgaacgtggctcagggcatccggagcttcgtccagctgtgggacgacaccacg
cgcccggagagctccagcacggccgggacgcccgcccccgtgacccccaccagccccctc
gccctcccggggccctcccggccccccccggagaacgggacggctctctggctgggcagc
acggatgccccgcgcgtggaggccagcaccctgccggcgcccacccggctgcccccctcc
ctggacaggccccgggcagcgctcagggagccctcggggccgccgccttctccaggtaga
gcctctctgtcctccgcgccccgtggggctcctcccggggggatccagccgtccccgggg
ccgccccaggatctggacggcgagggactccggcccggcctgcagcaccgactccccggc
ctccgcgggcgctcgccgcatctgcttcccctggtgatgggtgctctgggcgcagacgcg
gccccctcggctctgtcctctgacccccccgccctgctgcctggaaccccactctcagct
gtcaccgggggcaggggcgcttgggctgctcccaccgcggactctctggggcctgggcct
gctaataactccgccccgctgacccccaccggccgctgcctgcccctgccgcccgccctg
ccggtgtgcggccgcctgggcatcgggcgcgcctggctgcccaaccacctgcagcacgcc
agccgcgacgaggtgcgcgccgccgcccgggcgtgggggggcctcctgcggacgcgctgc
caccgcttcctcgcccggttcgtctgcctgctgctggccccgccctgccgctccggcccc
ccgcccgcgcccccgccctgccgccagttctgcgaggccctggaggacgcgtgctggagc
cacctgcccggggccgggctgcccgtgccctgcgcctcgctccccgcccaggaggacggg
ctgtgcgtgttcattgggccgggcgcagagagccggggcttggaggtggggctcctgcag
ctgctgggagagcccccgccccagcaggtcacccaggtggacgaccccgacgtggggccg
gccttcgtcttcggcccggacgccaacagcggccaggtggcccggtaccacgtccccagc
ccgttcttccgtgacttctcgctgctcatgcacgtgcggccggccaccgagggcccgggg
gtgctgtttgccatcacggacgcggcccaggcggtggtctccgtgggcgtgaagctgtcg
ggcgtgcgtgacgggcagcagcacgtccagctcctgtacacggagcccggggccgcccgg
acccgcacggccgccagcttccgcctgcccgccttcaccggccagtggacgcgcttggcg
ctcagcgtggacggcgcgacggtggcgctgttcgtggactgcgagttgttccagagggtg
cccctggagcgctccccggggggcctgcagctggagcccggcgccggcctgttcgtggcc
caggcgggaggagcggaccccgacaagttccaggggatgatcgctgagctgagggtgcgc
ggggacccgcacgtgagccccctgcactgcctggaggaggacgacgacgacagcggcggg
gtgtctggagacttcgggagcgggctggaggactaccgggagccgtcggtgagtgccggg
ggccgccttcctggggtcctgccagtgtggccgggtctgctccccaaagccgagctcccc
gaggctcccccggtcacttctccgcccttggctggaggcagggacgtggaagattccaga
atggaagaaatcgaggaagaagccacggcgtccccgttgggagctcggaccctccccggc
tcggctacagtcgccgcagagagcgcccaacgccttgggggcagcctgcaggaggctcct
acaggccctgcggcgcacaaccctgaagcatggccgggacctgggccacagggccccccg
ggccccccagggccgccggggaaggatggcacccctggaagggacggtgagccgggggat
cccggtgaggacgggaggccgggtgaccctgggccgcagggcttccccggaaccccggga
gacgtgggccccaagggcgagaagggcgaccctggggtcgggccaagaggacccccagga
ccccaagggcctccagggccaccaggaccctccttcagacacgacaagctgaccttcatt
gacatggagggttccgggttcggcggtgacctggagagcctccgaggccccagaggcttc
cccggcccccctgggccccccggcgtcccaggcctgcccggagagccaggccgcttcggg
atgaacagctcggacgtcccaggccccgcaggccttcctggtgtccccgggcgggacggg
ccccctggacttcccggcgccccgggaccaccaggccctccggggaaagaaggaggacca
gggaagcccggcccgaaaggcagccccggtgacgcgggcgccccaggacctaagggaagc
aagggtgaccccggccccatcggcgttccaggggagagcggcttggcaggaccccccggg
ccggctggaccgccagggccccccggacccccggggccaccgggaccaggactggccgcg
gggtttgttgacatggaaggctcgggggaacccttctggtcgacggcgcacggagccagc
gggccgcagggaccgccaggcctgcccggggtcaagggggaccctgggatagtgggacca
ccgggcgccaagggagaagtcggcgcagatgggcctcccgggttccccggcctccctggc
agagagggcacggccggagcgcagggacccaaaggagaaaaagggacccagggagagaaa
ggcgagccagggagggacggagtggggcagcctgggctccccggaccccccggacccccg
gggcccgtcgtctacgtgtcagagcaggagagagcggcgacaggcgtgccgggacccgag
ggccggccgggacacgcgggctttcctggtccggccgggccgaagggagatctgggctcc
aaaggccagcggggccccccagggcccaagggcgagaagggcgagccgggcccggcgttc
agccccgacggcagcatgctggcccccgcccagaagggggccaagggagagcccggcttc
cgaggccccccgggtccctacgggcggccggggcacaagggagagatcggcttccctggg
cggccgggtcgccccgggatgaacggactgaagggggagaaaggggagccaggacaggcc
agcgccggcttcggtatgacgggtccacccggtcccccagggcctccggggcccccaggc
cctcctgggactcccgtctatgacagcaacgcatttatggagcctggccaccccggacct
ccaggattgccagggcaccagggaccttctggaccaaagggtgacaaaggagacgtgggc
cctccaggaccaccaggccagttccccttcgacctcctccagctcggggctgagatgaag
ggggagaagggcgaccgaggcgacgccgggcagaagggcgagcgcggtgagcccgggggc
ggcgggttcttcggctcaagcgtgcccggcccccccggccccccgggctaccccggcatc
ccgggtcccaagggagagagcgttcagggccatcccggcccccctggacctcagggtccc
cctggcatcggccatgaggggcgtcgggggcctcccgggccccccggcccccccgggccc
ccaggacccccttcctttcctggcccttacaggcagactatcagtgtccccggccccccc
ggaccccccgggcctcccggcccccctggaaccatgggcacgtcctcaggggtgcgcatc
tgggccacgtaccagacgatgctggacaaggtgccggacgtgccggagggctggctcatg
tttgtggccgagagggaggagctgtacgtccgggtccggaacgggttccggaaggttctg
ctggaggcgcgggtgccactcccacgcgggacggacaacgaagtggccgccttgcagccc
cccgtggtgcagctgcacgagggcaacccatacccccggcgggagcccacccacgccacg
gcgcggccctggcgggcagatgacatcctggccagccccccgcgcctgctggacccccag
ccctaccccggggccccgcaccacggctcctacgtgcacttccagccggctcgccccact
ggtgggcccgtccacacccacacccacacccaccaggacttccagccggtgctgcacctg
gtggccctgaacagcccgcagccgggcggcatgcgaggcatccggggagcggacttccag
tgcttccagcaggcgcgcgccgcggggctggccggcaccttccgggccttcctgtcgtcg
cggctgcaggacctctacagcatcgtgcgccgcgccgaccgcaccggggtgcccgtcgtc
aacctcagggacgaggtgctcttccccagctgggaggccttattctcgggctccgagggc
cagctgaagcccggggcccgcatcttctctttcgacggcagagatgtcctgcagcacccc
gcctggccccggaagagcgtgtggcacggctccgaccccagcgggcgccgcctgaccgac
agctactgcgagacgtggcggacggaggccccggcggccaccgggcaggcgtcgtcgctg
ctggcgggcaggctgctggagcaggaggccgcgagctgccgccacgccttcgtggtgctc
tgcatcgagaacagcgtcatgacctccttctccaagtag
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integrated database retrieval system
