Canis lupus dingo (dingo): 112676066
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Entry
112676066 CDS
T08371
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
clud
Canis lupus dingo (dingo)
Pathway
clud04140
Autophagy - animal
clud04142
Lysosome biogenesis
clud04148
Efferocytosis
clud05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
clud00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
112676066 (VPS39)
04140 Autophagy - animal
112676066 (VPS39)
04148 Efferocytosis
112676066 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112676066 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clud04131
]
112676066 (VPS39)
Membrane trafficking [BR:
clud04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
112676066 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
Beta-prop_WDR36-Utp21_1st
DUF4145
Lgl_C
SAM_CEP-1_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
112676066
NCBI-ProteinID:
XP_025328853
Ensembl:
ENSCAFG00020004611
UniProt:
A0A8C0JSW1
LinkDB
All DBs
Position
30:complement(9332587..9379917)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKEDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLCFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLIFLEIS
GYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTKMAEEYCHKHYDQNR
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccagtgccgatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaagaatggcttcttgttggcaccaaacaaggacatcttcttctctat
aggatccgaaaggatgctggttgcaacaggtttgaagtgacactagagaaatccaataaa
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttatgttcatgacctattgacctttcaacaaatcaccacagtt
tcaaaggcaaagggagcatcactattcacatgtgacctccaacacacagagactggtgag
gaggtattgcggatgtgtgtggccgtgaaaaagaagctgcagctctatttctggaaggat
agggaatttcatgaattgcagggggactttagtgtaccagatgtgcccaagtctatggca
tggtgtgaaaactccatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaagggtccatcaaagagctctttccaacaggaaaacaactggagccgttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaaatgtgccttgaactggacagacatcccagtggccatggag
caccagcctccctacatcattgcagttttgcctcgatatgtggagatccgaacatttgag
ccaaggcttctggtccagagcattgaattgcaaaggccccgcttcattacctctggagga
tcaaacataatctatgtggctagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctacagctcgca
gaaatgaaagaagattcggacagcgaaaagcagcaacagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctatacccagacctgctgcccacagactac
agaaagcaactgcagtatcctaacccactgccagtgctgtcgggggctgaattggagaag
gcacatttagctctgattgactacctgacacagaaacgaagccaattggtaaagaaactg
aatgactctgatcaccagtctagcacctcccctctcatggaaggcactccgaccatcaaa
tcaaagaagaagctattgcaaatcattgataccaccctgctcaagtgctacctccatacg
aacgtggccttggtggcgcctctgctgcgcctggagaacaatcactgccacatcgaggag
agtgagcatgtgctgaagaaggcgcacaagtacagtgaactgataatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctggtggaccagtccaagaaagcaaactcc
cctctgaaaggccatgagaggacagtgcagtatctgcaacatttgggcacagaaaacctg
catttgattttttcgtactcggtatgggtgctgcgagacttcccagaggatggcctgaag
atatttaccgaagacctcccggaggtggaatctctgccacgagaccgagtgctctgcttc
ttagtggagaattttaagggtctagctattccttatctggagcatgtcattcacgtttgg
gaggagacgggctctcgattccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccctgcaggcaaaactccagtccctgctgga
gaggaagagggtgagctgggagagtaccgacggaagctccttatattcttggaaatttct
ggctactatgatccaggccggctcatctgtgactttccttttgatggcctcttagaagag
cgtgcactgctgctggggcgcatgggaaagcatgagcaagcgctcttcatctacgtgcac
atcctgaaggacacaaagatggctgaggagtactgccacaagcattacgaccaaaacaga
gatggcaacaaagatgtgtatctgtccctgctccggatgtacctgtcgccccctagtgtt
cattgcctgggacccatcaaactggaactgctggagccacaggccaacctccaggctgcc
ctgcaggtcctcgagctgcaccacagcaagctggacaccactaaggccatcaaccttcta
ccagcaaacactcagattaatgacatacgtatctttctggaaaaggtcttggaagaaaat
gcacaaaaaaaacggttcaatcaagtgctcaagaacctcctccatgcagaatttctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgtatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagccgacacctga
DBGET
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