Cyclopterus lumpus (lumpfish): 117725366
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Entry
117725366 CDS
T09199
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117725366 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117725366 (arid1b)
03021 Transcription machinery [BR:
clum03021
]
117725366 (arid1b)
03036 Chromosome and associated proteins [BR:
clum03036
]
117725366 (arid1b)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Helix-turn-helix
ARID
117725366 (arid1b)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117725366 (arid1b)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117725366 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
CR6_interact
Motif
Other DBs
NCBI-GeneID:
117725366
NCBI-ProteinID:
XP_034381377
LinkDB
All DBs
Position
22:8601099..8788798
Genome browser
AA seq
1971 aa
AA seq
DB search
MASPSWPTAVTSSKGHRRDGRGIHRSTKSQTASRGEKRYPITTRLSPRIQMEELPLCTFP
EVSSMDFMAMKRSQLYSMANNPYSTPQQPGGGGPYPPSQPYTSPPPHRYPMSMQGRGQIG
MGGMQYPQQQQVAPYGQQGMGGYSQQQQQQAGQQGTPPYFSPPQQTPPGQTQSPYLQPRP
PPQQEAQQETYVTRGPAPGNSGKANNEDGVSQDRPSSLPDLSGSIDDLPTGTEAGLGSAV
SVGGSSSSSSSSQGEQGGASNQGQSPFSPHASPHLPSQRSGPSPSPVGSPAGSTQSQQSR
SGSGPISPASGPSANTTAPGSAMAPQSSGNGPEGTHPPITRSPMAQEKGFMSNMQRNQGS
SQFASPQSGPSMSPHPSPGGPLYSVVGPYSQSGPTGLYGPQGSQYGHQGNYPRPSNYGGP
ASTSYSGPGPGMTNSLGMNASSPMHGQGPGQPIPVGRSHGPGSQNRVYPPMAPSSPSMPQ
PAGPGMGPPSLGSSNRKAQEAAAAAMPGSANSTHNRRPPYIRSQAQMQPPRPTSTHWPTP
QPASTHPPPSPPLRPHHPPFLPPSHSQHYRQGSYQGPGISQASTMATTVPNSQPTGINSS
AMGNAQGPAYNMPPSGAMGMSGDGMMSPDGKSKTDMKDDSGPANEPHKPKLQDGYSNNSS
SSSSQQCVSQPATPGSALPVPSPLSPSPASLSSYHGDDSDSISSPPWPLKTPSSPKANPN
SSSLSGERITRLFELGVEPERRGWVERYLTFMEERGTPVTQLPTVGKKPLDLWKLYVAVR
EIGGLAMVNKNKKWRELSTTLNVGTSSTSASSLKKQYIQYLFACECKMERGEEPPADSSS
SGSSVAGGDSRKQVKIQPPSPANSGGSLQGPQTPLSSGSSSTAEAVGDLKPPTPATTPLG
QVTPLPPNRSSVSIQDPFSEVSDPAFQKRAASQPPSAPYQQALSMPDMMMRMQYDAKDPF
AGMRKMAGADPYIPGQMPSGGMQDMYGRPPSALSMSQRSQYPYGPGYDRRPDHVMGMEGN
MGPPGSQNNMGPSNSEGSMYSPSRYPSQQRHDGYSQQYPNMPYGMHPSGMYPQQQQGYKR
PMEGMYGPPPKRHEGDMYAMQYANQQPDMYNHYGGGYSGPEHRPIQGQFPYPYPRDRMGP
SGQSQHSMMGGGPTPNHAADGPNMWPSRTELGYPYPNRQGPPSQMPPYGSMGRDDMDGRP
GQEQWHRQSPYMSSSGGMPPLSSRQPSSYSNSPSMTNHLSRALSPGAFQRSMDSRMSPKA
PFMSPMKMPKPGMTMMGSQGGGPLGHFPPNLRRDFNYPPGSVEATMPILKPRRKLTSKDT
GTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVGSFTLSQLPGFLELIVEYFRRYL
IEIFGILEEFEVGTVAQKSLLDPAAKQKEEVIPDQDSNTHPEPESAPAEEMQVEQAGGNV
EEAQPVTTAESQSAEASSEKEESEMSIKKEDTNGEDREKDGKEEEREKGAENKKECVDQP
VAELKPKLKQASKYDKLPIKIVHKEDLFEDMTEHLGYVTEFTSGLLHWQAGGGDSTAHIQ
TQFEPRSEPPPRADGKTGKENKEDNTVDDGKTQPLKHITATIDDVLCARVDALSYAHPAR
SLPSYPFRVHHDGEQDHITLLEDEPRCLDEAPLSTSSAWQDSLAKRCLCVSNIVRSLSFI
PGNDLDMSRHPALVLLLGRLLLLHHQHPERNRSPPSYQKDEQKEQGLSSSKEEWWWECLS
LLRENAMVSLANISGQLDLSTYPDTICLPILDGLLHWMVCPSAEAQDPFPSAAPHSQLTP
QRLVLEALCKLSIQGGNVDLLLATPPFSRQEKLFTILVRYVGQRKAQVYREMSVAVLSHL
AQGDPTAARAIAVQKGAVGNLVGFLDDGVSMAQYQQNPHSLLHMGHPPMDPPSINMMCRA
AKGLLAMAKVAENKTEFVLYESRLLDISISSVLNAGVVAIICQVLFHLGKL
NT seq
5916 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccttcctggccgacggccgtgacctccagcaagggtcaccgaagagatggc
agagggatccacagatccactaaatcacagacggcgtctcggggagagaaacgctacccc
atcacaacgcggctgtcacccagaatacagatggaggaactgcccttgtgcactttccct
gaagtgtcctccatggacttcatggctatgaagcgctcgcagctctacagcatggccaac
aatccttactccactccacagcagccaggaggaggtgggccttaccctcctagccagcca
tacacatcacctcctccccacagatatccaatgagcatgcaagggaggggccaaattggc
atgggcgggatgcagtaccctcaacagcagcaggtggcgccatatggccagcaggggatg
gggggctacagccagcagcagcagcagcaggcagggcaacagggaacccctccatacttc
agcccccctcagcagacccctccaggccagactcagagcccttacctgcagcctcgaccc
ccaccacaacaggaggcccagcaggagacgtacgtaaccaggggtccagccccagggaat
tctgggaaggccaacaatgaggatggcgtctcccaagaccgcccgtccagtctgccggat
ctgtccggttcgattgatgacctccccactgggacggaggccggtctgggctcagccgtc
agcgtcggtggctcctccagcagcagcagcagtagccagggggagcagggaggggccagc
aaccagggacagtcccccttctcgcctcacgcctccccccacctacccagccagaggagc
gggccctctccctcccctgtgggctcacccgcaggctccactcagtcccagcagtcgcga
tcaggctctggacccatctctcctgccagcggaccctcagccaacaccactgcaccaggt
tctgcgatggccccacagagctctgggaacggaccagaaggaacccacccgccaatcacc
cgctcacctatggctcaggagaaagggttcatgtccaacatgcagagaaaccagggtagc
tctcagtttgcctctcctcagtccggaccttctatgtccccccatccctcacctgggggc
ccattgtattctgtggtgggaccctactcccagagtggccctacaggcctttatggacct
caaggatcccagtatggacaccaaggtaactatcctcggccctctaactatggtgggcct
gccagcaccagctacagtggccctggccccggcatgaccaacagtctggggatgaatgca
agcagccccatgcacggccaggggcccggccagcccatacctgtaggtcgcagccacggc
ccaggcagccagaacagggtgtacccgcccatggctcccagctcccccagcatgccccag
ccagctgggcccgggatgggccccccttctttgggtagttctaaccgcaaggcccaggag
gcagcagcagctgccatgccgggatctgccaactccacacacaacaggcggcctccatat
attaggtcccaggcccagatgcagccgccccgacctacctccacccactggcccacacct
cagcctgcctccacccatccaccaccttcccctccactcagacctcaccatccacccttc
ctgccaccctcacattcacagcactataggcagggcagctatcaaggccctggcatcagc
caggcgagcaccatggctaccactgtccccaacagccagccaacgggaatcaacagctcc
gccatgggcaacgcacaaggtccagcctacaatatgccgccttcaggagccatgggaatg
tcaggagacgggatgatgagcccagatgggaaatcgaagacggacatgaaagacgacagc
ggtccggccaacgagcctcacaaaccaaagctccaggacggctacagcaacaacagcagc
agcagtagctcccagcagtgtgtgtcccagccagccacgccaggcagtgccctgcccgtg
ccctcccccctctcacccagcccagccagcctgtcctcgtaccacggagacgacagcgac
agcatcagcagccccccctggcccctcaagaccccctccagtcctaaagccaacccaaac
tcctcctccctcagtggggagcgaatcacgcgcctatttgagctgggtgtggagccggag
aggcggggctgggtggagcgatacctgaccttcatggaggaaaggggcacgcctgttacc
cagcttcccactgtgggcaagaagccgctggacctctggaagctctacgtagctgttcgg
gagataggaggcctcgccatggtaaacaagaataagaagtggcgcgagctgtccaccacc
ctgaacgtgggtacatccagcacctccgccagctcgctcaagaagcagtacatccagtat
ctgtttgcctgcgagtgtaagatggagaggggagaagagccgccggcagacagcagcagc
agtggcagcagcgtggctggaggggacagcaggaagcaggtcaagatccagccaccctca
cctgctaattcaggcggctccctccaaggcccacagacgcccctgtcctctggcagcagc
tcgacagcagaggcagtgggggatctgaaaccccccacacctgccaccacccccttggga
caggtcacaccactgccccccaacaggagcagtgtgagcatacaggaccccttctcggag
gtgagtgacccggccttccagaagcgtgctgcctcccagcccccctcagctccttaccag
caggccctcagcatgcctgacatgatgatgaggatgcagtacgacgccaaggaccccttt
gccgggatgaggaagatggcaggagctgatccatacataccaggccagatgcccagtggt
ggcatgcaggacatgtatggtcgacccccgtcagccttgagcatgagccaacggtcgcag
tatccatatggaccgggctatgacaggagaccggaccatgtcatggggatggaggggaac
atgggtccccctgggagtcagaacaacatgggaccttcgaacagtgagggcagcatgtac
tctcccagtagatacccttcacagcagagacacgatggctacagtcagcagtatcccaac
atgccatatgggatgcatccatctgggatgtaccctcagcaacagcagggctacaaacgg
cccatggagggcatgtacggccccccacccaagagacacgaaggcgacatgtatgccatg
cagtacgccaaccagcagccagacatgtacaaccactacggtggcgggtactcgggccct
gaacacagacccatccagggacagttcccctacccctatccccgcgaccgcatgggcccc
tcaggtcagagccagcacagtatgatgggtggggggcccactcctaaccatgccgccgat
ggccctaacatgtggccatccaggactgagcttggctatccctaccccaaccgacagggg
ccgccatcacaaatgcctccttacggctcaatgggcagagatgacatggacggacgtccg
gggcaggagcagtggcaccgtcagtctccctacatgtcatcatcaggaggcatgcctccc
ctgtcctcacgccagccatcttcttattccaactctccatccatgaccaaccacctgtcc
agagcactcagcccaggagccttccagcgctccatggactctaggatgtcacccaaagca
ccgttcatgtcacccatgaagatgcctaagcctgggatgaccatgatgggctcacaggga
ggtgggccccttggtcactttcctcccaacctgaggcgggatttcaactacccaccagga
tcagtggaggccaccatgccgattcttaagcccagacgcaagctcacctccaaggacact
ggaacgcctgaggcctggcgcgtgatgatgtctctgaagtccggcctgctggcagaaagc
acatgggccctagacaccatcaatatcctgctgtacgatgacagcactgtgggctccttt
accctctcgcagttgccaggattcctcgagctgattgtggagtactttcgccgttacctg
attgagatctttggcatcctggaagagtttgaggtggggacagtggcccagaaaagcctt
ttagaccccgctgctaaacagaaagaagaagtcatccctgaccaggactctaacacccat
cctgaacctgagtcagctccggcagaagagatgcaggtggagcaagcaggaggcaatgtg
gaggaagctcaaccagtcactactgcagagtcacagtcagctgaggcgagcagtgagaag
gaggagtctgagatgagtataaagaaggaggacacaaatggcgaggaccgagagaaagat
ggaaaagaagaagagcgtgaaaaaggagcagagaacaaaaaggagtgtgttgaccagcct
gttgcagagctaaaacctaaactcaagcaagccagtaaatatgataagctccccatcaag
attgtccacaaagaggacctgtttgaagacatgacagagcacttaggttacgtcactgag
ttcactagcgggttgctacactggcaggcgggcggaggtgactccaccgcacacattcaa
acacaatttgaaccccgaagtgaaccgcctcccagggcagatggaaagacaggaaaagaa
aacaaagaggataacacggtggacgatgggaagacacagccgctgaaacatatcactgct
actatagatgatgttctgtgtgctcgggttgacgccctttcttacgcccaccctgcgcgc
tccttgccatcttaccccttcagggtgcatcacgatggggagcaggaccacatcaccttg
ctggaggatgagcctcgctgcttggacgaggctccgctctccacatcctctgcctggcag
gactcactggccaaacgctgcctctgcgtctccaacatcgtccggagcctgtcctttatc
cccggaaatgacttggatatgtcccgccaccctgctctggttcttcttctgggccggctg
ctcctgctgcaccaccagcacccagagaggaaccgatcgcctcccagctaccagaaagac
gagcagaaggagcaggggctgtcgagcagcaaagaggagtggtggtgggagtgtctgagt
ctgctcagggagaatgctatggtcagtctagccaacatctcgggtcaactggatctctcc
acctatccagacactatctgcctccccattttggatggccttctccactggatggtgtgc
ccttcagctgaagcccaggaccccttcccatcagcagcaccccactcccagctcactccc
cagaggctggtgctggaggcactctgcaagctgagcatccagggcggcaatgttgacctc
ctgctagctacgccacctttcagccgacaggagaagcttttcaccatcttggtccgctac
gtgggtcagaggaaggcccaggtgtacagagagatgtcagtggctgtactctcccacctg
gcacaaggagatcccacagcagcacgggccatagccgtgcagaagggcgccgtgggtaat
ttggtaggcttcttggacgatggtgttagcatggcgcagtaccagcagaaccctcacagc
ttgctacacatggggcacccccctatggacccacctagcataaacatgatgtgcagagca
gctaaaggcctgttggctatggctaaagtggcagagaacaagacagagtttgtgttgtac
gaaagccgattattagacatctccatttcctctgtgctcaacgcgggggtggtggctatt
atttgccaagttctctttcacctagggaaattatga
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integrated database retrieval system
