Cyclopterus lumpus (lumpfish): 117725374
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Entry
117725374 CDS
T09199
Symbol
nrde2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117725374 (nrde2)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117725374 (nrde2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
117725374
NCBI-ProteinID:
XP_034381390
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All DBs
Position
22:5525861..5536667
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AA seq
1208 aa
AA seq
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HTIMALFPAFAELESDKVEDSSKELNWLNNKSFQAGDAVSLHNRFFEKTSERPKEKESSV
GRYVNSEEEEEEEEEGNVPPKKKKKKSEKKRKKKKKHKKKNGHSDSSGTDSETIFPSDLK
REQKADSPQAAPLASCFSWLDDLQSPTEQLFCVDRKADPSNWTYKSLYRGDVARYRRKGS
SSLGLDPRRQGVSWEESASHKKQKGGDRKKAADRYFSAVSRQLLSSEPPTPTLPRVSGCG
DAISPTPFLSLGADEENKGGETGVRVPTSTVNPLXVYDSSTALWLQGKGQQEQTQQQDTQ
TGQSAALLTGRTEEFNRRLREQPADTQLWLKFIRYQDELSVTVFGGEKEQQGGDAAERRK
SSYRAVQEKKLSIAERAVATNHGCVALQLERLRICQELLEPSLLAKEWKKLVFLHPNSAP
LWREYLLFTQSYFSNFTVSKVNAAYGKCLSTLSAVRDGSMVSHPALPGLEEDILDIFTQQ
CHYLRQSGHSEKATSLFQAMIDFTFYKPDSVRKLSTKQQVEFFEPFWDKAGRSESGEMGA
RGWKAWMLQQERGGWLQPSGRGEEEEEEDEEEVKDRSQPRWTVWLDVEPSREAAHWLPWR
PDKGRGQSEVDCEDPDRQVLFDDIGPSLICLSSPELQLRLLLRFVSFLGLPVDSVLSAXP
CQPGLLLENLSLLTQGNDLKCPLTSHDLLXPGVNSVGHTTTLQGTRKWPGLGKLGERFVA
NIFSVVQPVIPAHHRAALSLSWMQYEKLKVLRCLRGQNKKRLRSQGKSXKRVAKQLLKEP
DNRSSLALWQEYAHLEWMLGNLEEARKVFXTASAMGGTTGLKSPALCELCLLWAQLEVED
GSSVRGEGLPDVAVSPAVCVLTRLAEGTSSSSQSLSPVSILKARKSYEQALAAVLSALDQ
SIHNPQANRKAHEDLLGDKLRPRGLISCYALFQYLTMGVQAANAVYSQARERMEVLHHTL
TQRNSEMEEASLAGTDTGTDAGQSAEDSSHTRRHCVHRLASDCETLAVQHAALLRYHNTV
GVFPLATLRQALTSALATWSSSAPLWSIYIQNRYHSAGRARRFFHSVTRDNSSVVPRLFA
IVAEQQRKQLVDAAQRSCCHDAALPILPETGLSNRIRGLFXKRHRNRMGAHCPLLWRMYI
HFLVSEGKVDKARGIFYKALQNIPWAKGLYMDAVQLFPEHLQEFVDLMTEKELRLRLPLE
ELDILLEE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
cataccatcatggctctgtttccagcgtttgctgaattagagagtgacaaagtagaggat
tcttctaaagaattaaactggctgaacaataagagtttccaggccggggatgccgtctct
cttcacaatcgtttttttgagaagaccagcgagaggccgaaagagaaggaatcaagtgtt
ggtagatatgtgaactctgaggaggaagaggaggaggaggaggagggtaatgtgccacct
aaaaagaagaaaaagaagagtgaaaagaagagaaaaaagaagaaaaaacacaaaaagaag
aatggacactctgacagcagtgggactgactccgaaaccattttccccagtgacctcaaa
agggagcaaaaagcagatagtccgcaggctgctccgttagcaagctgtttctcctggttg
gatgacctccagtcgcccacggagcagctgttctgtgtggaccgcaaagccgacccatcc
aactggacgtacaagtccctgtacagaggagatgtagccaggtataggaggaaaggcagc
tcgtccttgggcctggacccccgcagacagggagtcagctgggaggagtcggcgtcgcat
aagaaacagaaaggcggggacaggaagaaggcagccgacagatacttctctgcagtcagt
cgccagctgctgagttccgagccccctactcccacattaccaagggtttctgggtgcggc
gatgccatcagccccacccccttcctctcgcttggtgccgacgaggagaacaaaggaggg
gagaccggtgtcagagtgccgacatcgacagtaaatcctctcngtgtgtatgactcctcc
acggccctctggctgcaggggaagggacagcaggagcagacacagcaacaggacactcag
acggggcagagcgcagcacttttgaccgggaggacggaagagtttaacaggcggctcaga
gagcagccagccgacacacagctatggctaaaattcattcgataccaggacgagctgagt
gtgacagtgtttggaggcgagaaggagcaacagggcggcgacgcggccgagcggcgcaag
tcttcctacagagcggtgcaggagaagaagctgagcatcgcggagcgcgcagtggccacc
aaccacggctgcgtcgctctgcagctggagaggctcaggatctgccaagagctcttggag
ccctcacttctggctaaagaatggaagaaactggtgttcctccacccaaacagtgcccca
ctgtggagggagtatctgctgttcacccagagctacttcagcaatttcaccgtgtcaaag
gtcaacgccgcgtacgggaagtgtctgagcacgctcagtgcggtgcgcgacggcagcatg
gtctctcacccagccctgccggggcttgaggaggatattttggatatcttcacccagcag
tgtcattacctgcgtcagtctggtcactcagagaaagcaacttctctgtttcaggccatg
atcgactttacgttctacaagcccgacagcgtacggaaactgtccaccaagcagcaggtt
gagttcttcgagccgttctgggacaaggcggggaggagcgagtccggagagatgggggcc
agaggctggaaagcctggatgctccaacaagagcgaggagggtggctgcagcccagtggc
agaggagaagaggaggaggaagaggacgaggaggaggtgaaggatcggagccagcccaga
tggacagtctggttggacgtggagccgtctcgagaagcagctcactggcttccctggagg
cccgacaaaggcaggggacagtcagaagtagactgtgaggacccggacagacaggtgttg
tttgatgacatcggcccatccctaatttgtctgtcttcgccagagctccagctccgtctt
cttctccgtttcgtctccttcctggggctgcccgtagactctgtgctctctgctngcccc
tgtcagcctggcctgctgctggagaacctttctctgctcactcagggtaatgatctcaag
tgtcctctgacctcccacgacctacttngacccggggttaactctgtgggtcacacgacc
actctccagggaacaaggaagtggccggggcttgggaagctgggcgagaggtttgtcgcc
aatatcttcagtgtggtacaacctgtcattcctgcccaccaccgagccgcactgtcactc
agctggatgcagtacgagaaactcaaggtcttgcgctgcctgcgtggccaaaacaagaag
cgcctgcgctctcagggcaagagcngcaagcgggttgccaagcaactgctcaaagaaccc
gataaccgctcgtcgttggcgctgtggcaggagtacgcccacctggagtggatgctgggc
aacctcgaagaggctcgcaaagtcttcntcacggccagtgcgatggggggaacaacgggg
ctgaagagccccgccctctgcgagctgtgtctgctgtgggcccaactggaggtggaggac
ggctcgagtgtgcggggcgaagggcttccggatgtcgccgtgtccccagctgtttgtgtg
ctcacccggctagcagaaggaacctcctcatcctcccagtccctctcgccggtttccatc
ctgaaagccaggaagtcgtacgagcaggctctggctgccgtcttgtcagccctggaccaa
agcatccacaaccctcaggccaacagaaaagcgcacgaggacctgctgggagacaagctg
aggccgaggggcttgataagctgctacgctctctttcagtacctcacaatgggcgtccaa
gcagcgaacgccgtctacagccaggcgagagagaggatggaggtgctgcaccacacgcta
acgcagcgcaacagtgagatggaggaggccagccttgctggcactgatactggcactgat
gctggccagtctgcagaggactccagccacaccagaaggcactgtgttcacaggctggcc
tccgactgtgagacattagcagtgcagcacgcagcgttgcttaggtaccacaacaccgtc
ggtgtgtttccacttgcaacactgagacaagcgctgacctctgccctcgccacatggtcc
agcagcgcccctctctggagcatatatatacagaaccgttaccatagtgccggccgggca
cgtaggttttttcactctgtaaccagggacaacagcagtgtggtgccgcgcctctttgcc
attgttgccgaacaacaaaggaagcagctggtagatgctgctcagaggtcttgttgccat
gatgctgccttgcccatcctgcccgagactggactaagcaaccgtatccgtggactgttt
tgaaagcgccatagaaaccggatgggtgctcactgccctttactttggaggatgtacatc
cacttcctggtgtcggaagggaaggtggataaagccagagggatcttctacaaggcctta
cagaacattccctgggctaagggtctgtacatggacgcagtgcagctgttccctgagcat
ctgcaggagtttgtagatctgatgacggaaaaagaactccgactccgactgcctcttgaa
gaattggatatactactggaggaatga
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