Cyclopterus lumpus (lumpfish): 117725421
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Entry
117725421 CDS
T09199
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117725421 (scaf8)
03041 Spliceosome [BR:
clum03041
]
117725421 (scaf8)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117725421 (scaf8)
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117725421 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
117725421
NCBI-ProteinID:
XP_034381465
LinkDB
All DBs
Position
22:8057118..8083156
Genome browser
AA seq
1423 aa
AA seq
DB search
MEAVKVFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVVDSIVRQSRHQFGMEKDVFAPRFSKNIIATFQQLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSITPVMSSSAAPVNNATPGTPATPATPANIVHGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSINPLEQRVSSFNKKLLGPFDFGNDSDRGEESKKNSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQKAMSIEGQDSIFGHENTVASAQSSSSQAQLPELDNK
LDDTIDNQQQDMDLDEGPDGMEEEIFEAEEKKITSTRSRTRSRSRSRSPKRRRSRSRSGS
RKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVG
QVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGSK
IIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWEAA
KNAEPAKEVTSQPLIVETTAASNTQTETYNQQVTMMPVQLPVAQAVPSAVGLVPPTFPVT
MGIPPPGYGPPPPFIRAGFNASQPPPGFMQAAQTAAMVSAATSLVQPSVATGQEAVKESL
FSAMIPPTSTIPGGFMAGVFNPVGVHAQQATNEKMSQSADGMDAAAELTLQGMQNAVRSG
MGLLGMHPTASLAHQLHQSGLVGQRMPGLLPLDVRPNLLQPGAAARFPLLMQQGPAGLLE
SSLQAQARARAPFSQLDPFNRAPNLNNENVSKTEDESSSGADEGKDQDYRFPPMEKQSTG
LLRTPPPEQREPLGGGAGAAGGGAGGRPPLLQTPGTQPARTSLVGRLQALAGFTPDNRWN
QTRGDFDERDGVRGGLQAPPGPKGFQEERPTPGQNFPNRFESRPATAGGAAPGVSGNAGA
VGGPQAWNRSSGAAAAPFDSELHQDLDDRRRPWDRQRDRDERDFDFRRELNGNRHSRERE
RERERDRDRDREQGRDRPREHERDRDRDKERDRERERERGGWTPLLPLPTPLLPTPPLNP
NLTLNQGKLLAPLKLNPQIQQRFQSPLLPQAQGKPSLLGLTQPLPQVQTKSPPPSQSQAA
VTEHQSETPAPSETCRAQSPPLAQSPDQSPDQSSDDKGQSPLTEAPDQAESSLQPETPPQ
IESPSQPKTPSPAQSPSKTTASPDTETPSQASPLIEASSQDSPVAFTQAASPPEETHSLE
EQESPRKDEKESPERASSRQPQWVNGAGMDNSTVAESTPDTSPESSPERFPEPTEEPSPN
SVLPESEPEQHASPEDVDNEQSEPMEEAASQPVVDTFTDTEGT
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagtctttaacaatgagctctactcattgaatgagtacaagccaccc
atctccaaggccaagatgacccagatcaccaagtctggaatcaaagctataaaattctac
aagcatgttgtccagagtgtggagaagttcattcaaaagtgcaaaccagaatacaaggtc
cctgggctgtacgtcgtcgactccattgtcaggcagtcgcggcaccagtttggcatggag
aaggatgtgtttgccccgcgcttcagcaagaatatcattgcaacgttccagcagctctac
cgctgcccttcagatgataagagtaagatagtgcgagtcctgaacctgtggcaaaagaat
gcagtcttcaagagtgacatcatccagcctctgttggacatggcggcagggattccccct
cccagcatcacacctgtcatgtccagcagtgccgctccagtcaataacgctacacctggt
accccagctacccctgctaccccagctaacatagtccacggtctgcctgattgggcttcc
cagattaccaacacagacactgtggctgctgttgcacagatcctacagagtccccaagga
caacagctgcagcagctggtgcagagtctacagatgcagcagcagaagccccagccatcc
cttctgcaggccttggatgctggcctggtggttcagttgcaagctctgacagctcaactc
actgccgccgctactgccaacagcatcaaccccctggagcagagggtgtcctcttttaat
aagaagcttctgggtccttttgattttgggaatgattctgatcgcggtgaagaatctaaa
aagaactcctcatcatctcagttgccaatggtgtcagagcccatcaacagctccctcttc
catcagctggctgagcagcttcaacaacagaacctggaacagtttcagaagcagctttta
gagcaccagcagaaggcaatgagcatagaagggcaggactcaatctttgggcacgaaaac
acagttgcatctgctcagagcagcagcagccaggcacagcttcctgagctagataacaag
ttggatgacaccatagataaccaacagcaggacatggatctggacgagggcccagatggt
atggaggaggagatctttgaggcagaggagaagaagatcacaagcacacgttcccgaaca
cgctcaaggtcgcgctctaggtctcccaagaggagacggtccaggtcccgctccggctca
cgtaaacgtaaacaccgtaagcgttcacgctcacgctccagagaccgcaagaggaagtca
tcaaggtcttactcgagtgaaagacgtgcccgagaacgagagaaggagcgacagaagaaa
ggactgcctcccatcaggtccaagactctaagtgtgtgcagcacgactctgtgggttggc
caggtggataaaaaggccactcagcaagacctcaccaacttatttgaagagtttggccag
attgaatctatcaatatgatccctcccagaggctgtgcctacatctgtatggtccacaga
caggatgcataccgcgcccgccagaagctcagcactggctccttcaaaattggctccaaa
atcatcaagattgcatgggctctgaacaaaggggtaaagcaggagtacaagcagttttgg
gatgtagacttgggcgtcacctacataccttgggagaaggtgaagctggatgacctggat
gactttgccgagggaggaatcattgaccaagagaccgttaatgatgagtgggaagcagcc
aagaatgctgagccagctaaggaagttacaagtcagccattaatcgttgagactacagca
gcatccaacacccagactgagacctacaaccagcaggtcaccatgatgcctgtacagctc
ccagtggcccaggctgttcccagtgctgtaggtttggtgcctcctaccttccccgtcacc
atgggcatacccccacccggctatgggccgccaccacccttcatacgggctggcttcaat
gcctcacagcctccgccaggttttatgcaggcagcacagactgcagccatggtctcagca
gccacttcgttagtgcagccttcagtggcaaccggccaagaagctgtcaaggaatcacta
ttcagtgctatgattcctccgaccagcactatccctggtggcttcatggctggtgtgttc
aacccagtgggagtccatgctcagcaggccaccaatgagaagatgtcacagtctgcagac
ggtatggatgctgctgcagagcttacactgcaaggcatgcagaatgcagtccggagtggg
atgggtctccttggaatgcaccccacagcttcactcgcccaccagctgcatcagtctggc
ctggttggtcagagaatgcctggcctgctccctctggatgtgcgacctaacctcctccaa
cctggggctgccgcccgcttccccctgctcatgcagcagggccctgctggcctccttgag
agttccctccaggctcaagcccgtgccagagctcccttctctcagctggaccccttcaac
agggctcccaaccttaacaatgaaaatgtatccaagacagaagatgagtcttcctctgga
gcggatgagggcaaagaccaggactaccgcttccctccaatggaaaagcagagcacaggc
ctgctgaggacccctccaccagagcaaagggagcctcttggaggtggcgccggagcagca
ggaggtggtgcaggaggccggcctcccctgctccagaccccagggactcagccagccaga
accagcctagtgggacgtctgcaggctcttgcaggcttcactcctgataaccgctggaac
cagactagaggcgactttgatgaacgagatggcgtgcgaggaggcctacaggcccctcct
ggtccaaaggggttccaggaggagcggcccacacctgggcagaacttccccaaccgcttt
gaaagccgtcctgcgacagcaggaggagcagcacctggcgtttcgggtaatgctggggct
gttgggggcccacaggcctggaaccgtagtagtggtgctgcagcagcaccttttgatagc
gaactacatcaagacctagatgatcgaagacgcccgtgggacaggcaaagagacagagat
gaaagggattttgactttaggagagagttgaatggcaaccgccatagcagagagagagag
cgggaacgcgaaagagatagagacagagacagggagcaaggcagagaccgccccagagag
catgaacgcgacagggaccgcgacaaagagagagaccgtgagcgggaaagagaacgtggg
ggctggacacctcttctccctctgcctacaccgctgcttccaactccacctcttaatcca
aatttgaccctgaaccaaggcaaactgctcgctccactcaaattgaacccccagattcag
cagcgattccagtccccactcttgccccaagctcaggggaaaccatctctcttgggtctg
actcagccgctgcctcaagttcagactaagtctccacctccatcgcagagccaagcagct
gtaactgagcaccagtcagaaaccccagctccgtctgaaacatgtagggcacagtcacca
cccttagcccaatcccctgaccaatcacctgaccagtcatctgacgacaaaggtcaaagc
ccattgactgaggctcccgaccaggctgagtcatcactacaacctgagacccctccacaa
atagaatcgccatcccagcccaagactccatccccggcccagtccccatccaaaaccact
gcttctccagacactgagaccccaagccaagcctcaccgctgattgaggcctcatcccaa
gactcacctgtggccttcacacaagctgccagcccccctgaagagactcactctctggag
gagcaggaaagcccaaggaaggatgagaaggagtcaccagagagagcatcctcacgccaa
ccccagtgggtcaatggagctgggatggacaatagcactgtggctgaatctacacccgac
acctctcctgagtcctctcctgagcgctttccggaacccactgaagaaccctctcccaac
tctgtgctccctgaaagtgaaccggagcagcatgcctctcctgaggacgtagacaatgaa
cagagtgagcccatggaggaagctgcgagtcagccagtggtagacactttcacagacact
gaggggacataa
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integrated database retrieval system
