Cyclopterus lumpus (lumpfish): 117725464
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Entry
117725464 CDS
T09199
Symbol
six4a
Name
(RefSeq) homeobox protein SIX4a
KO
K15615
homeobox protein SIX4
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117725464 (six4a)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
117725464 (six4a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
DUF6374
Motif
Other DBs
NCBI-GeneID:
117725464
NCBI-ProteinID:
XP_034381538
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Position
22:complement(11536350..11542685)
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AA seq
677 aa
AA seq
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MSSSSAGEVTTANDIKRENVKEVGKRECIKLVALDAAELSMERNTDAVRTELLVSAASSL
AFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAYHQARYQELY
SILENHSFSPSNHTFLQDLWYKARYTEAEKARGRPLGAVDKYRIRRKYPLPRTIWDGEET
VYCFKERSRNALKDLYNHNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQS
KSESDGNHSTEDESSKGQEELSPRPLSNSSDGVITHGILPIQTGPLDSGVVIQQIGDIKL
PPGSSSGGLYNGSLVTSNSPSAVFHNGGSSYLHTPGNVLFNGLNLGIQPLAFNPLRPSGG
VLLGGSGMDMQMQTGQEKGLGNSAEDSALQYGSYSGCVNGAEVKLEGVHAMAAQNGSPSV
LTFNSSSGALHLGGYNLVQVPSGVSDSDGSSLLNSDLGLPPLQLSSAPSSSTITQGTMPL
NNVAVSSSSDSFQQQDKLTMTSLHHSTVLYSMSNVGQPAIKKEPLEGGVYSSYHHGLHLD
SSGQLSYTTPNSEAVPSSRGPASTTEVSAVSSSSPEPEVYTTLTVSTPLMAQTDPSSHHL
QPTQYLRGHELRGPSSHLMGTGMNSNYMNLSENKVDGSGSGGVSDMVRAMCGEMEAVEGK
DLVKLQTVQMEENMADL
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttctgccggtgaagtcacaacagcaaatgacatcaagagggaaaatgtg
aaggaggtgggtaagcgggagtgcatcaagcttgtggcgctggacgcggcggagttgtcc
atggagcgtaacacggacgcggtgcgcacggagctgttggtgagcgccgcttcctctctg
gctttctccccggagcaagtggcgtgtgtctgcgaggctttgcagcagggaggtaatgtg
gaccggctggccaggttcctgtggtccctgccacagagtgacctgctgcgcggcaacgaa
agcatcctgaaagcccaagccctcgttgcttaccaccaggctcggtatcaggagctctac
agtattttggagaaccacagtttcagtccgtccaaccacacctttctacaagatctgtgg
tacaaggcccgatacaccgaggcggagaaggcgcgggggagacccttgggcgccgtggac
aagtacaggatccggagaaagtaccctctccccaggactatctgggacggcgaggagact
gtgtattgtttcaaggagagatcccggaacgcgctgaaggatctttataaccacaatagg
tatccctctcctgcagagaaaagaaatctcgccaagattacaggactctccttgacacag
gtcagcaactggttcaaaaacaggagacagagagacagaaacccgtccgaggcacaatcc
aaaagtgaatctgatggaaaccacagcacagaggatgagtctagcaaaggccaggaggag
ttgtctccccggcccctctctaactcctcagatggagtgatcacccatgggatccttccc
attcaaacagggcctctggacagtggggtggtcatccaacaaatcggggacatcaagctg
ccccctggatccagcagtggcggactctacaacggaagtctagtgacaagtaacagtccc
tcagccgtgtttcacaatggtggctcgtcttacctccacacacctggcaacgtcctcttc
aatgggctcaatttgggcatccagcccttggccttcaaccctctgaggccgtctggaggg
gtgcttctggggggctctggtatggacatgcagatgcagacaggacaggagaagggactg
ggcaattctgctgaggactcagccctgcagtacggctcctactcaggctgtgtgaacgga
gcagaggtgaagctggagggggtgcacgccatggctgcccagaacggaagcccctctgtg
ctcacgttcaactcctcgtcaggtgctctgcatctaggaggctacaatctggtccaggta
ccaagtggagtctctgacagcgatggcagttcattactcaacagcgacttaggtcttcct
ccactgcagctatcttcggctccatcttcctcaacaatcacacaaggtaccatgcctctg
aacaatgtagcagtgagttcctccagcgactcgttccagcagcaggacaagctgaccatg
acttccctgcaccacagcacagtgctctacagcatgagcaacgtcggccagccggccatc
aagaaggagcctctggagggaggtgtctattcctcgtaccaccacgggctccacctggac
tccagcggtcagctcagctacaccacccccaactcagaagcggttccttccagccgtggc
cccgcctcgaccactgaggtctccgccgtcagctcgtccagccctgagccagaggtctac
accaccctcactgtcagcacgcccctgatggcccaaacagaccccagcagccaccacctc
cagcccacacagtatctcaggggccacgagttgcgggggccctcctcgcacctgatgggc
actggcatgaacagcaactacatgaacctttcagaaaacaaggtggacggttcgggctca
ggaggcgtgagtgacatggtgcgggccatgtgtggggagatggaggctgtggaggggaag
gacctagtcaaactacagacagtgcagatggaggagaacatggctgacctttaa
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