KEGG   Cyclopterus lumpus (lumpfish): 117725635
Entry
117725635         CDS       T09199                                 
Symbol
rbb4l
Name
(RefSeq) histone-binding protein RBBP7
  KO
K10752  histone-binding protein RBBP4
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03082  ATP-dependent chromatin remodeling
clum03083  Polycomb repressive complex
clum04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117725635 (rbb4l)
   03083 Polycomb repressive complex
    117725635 (rbb4l)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    117725635 (rbb4l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:clum03036]
    117725635 (rbb4l)
Chromosome and associated proteins [BR:clum03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     117725635 (rbb4l)
  Histone modification proteins
   HAT complexes
    HATB complex
     117725635 (rbb4l)
   HDAC complexes
    Sin3A-HDAC complex
     117725635 (rbb4l)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     117725635 (rbb4l)
    PRC2.2
     117725635 (rbb4l)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     117725635 (rbb4l)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117725635 (rbb4l)
  Chromatin remodeling factors
   NuRD complex
    117725635 (rbb4l)
   NuRF complex
    117725635 (rbb4l)
   NuRF complex (fruit fly)
    117725635 (rbb4l)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_RIG_1st ANAPC4_WD40 eIF2A WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SPT8 MIOS_WD40 Beta-prop_WDR35_TULP_N NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 117725635
NCBI-ProteinID: XP_034381608
Ensembl: ENSCLMG00005000862
LinkDB
Position
3:8443621..8450483
AA seq 427 aa
MADKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPEGKDY
AVHRLVLGTHTSDEQNHLVIASVQVPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNHCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLKGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDIGAGPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNTTSKASHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPDNTPAS
ELEAQGS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcggataaagaggtgtacgacgatgcggtggaggaacgagtcatcaatgaggagtac
aagatctggaagaaaaacacacctttcctgtatgacctggtgatgactcatgcgctagag
tggccgagcctcactgtccagtggctcccagatgtcaacaggccagaggggaaggactac
gccgttcacaggctggttttggggacccatacatcagatgagcagaaccaccttgtgatc
gccagcgtccaggtaccgaatgacgacgcccagttcgatgcttcgcactacgacagcgag
aaaggagcagagtttggcggatttggttcagtaagcgggaagattgagattgagatcaag
atcaatcacgagggagaggtcaaccgagcccgctacatgccccagaaccactgcatcatt
gccaccaagactcccacctctgatgtgctggtcttcgactacaccaagcacccctcaaag
ccagatcccagtggggagtgtagtcctgacctcaggctgaaaggtcaccagaaagaaggg
tatggcctctcctggaatcccaacctcagcggcaacctgctcagcgcctccgacgaccac
accatctgtctatgggacatcggggccggcccaaaggaaggcaagattgtggacgccaag
accatcttcaccggccacacggcagtggtggaggacgtctcctggcatttgctccacgaa
tccctgttcggctcagtcgctgacgaccagaaactcatgatatgggacacccggtccaac
accacctccaaagccagccacgcggtagatgctcacactgccgaggtcaactgtctgagc
ttcaacccctacagcgagttcattcttgccactggttctgctgataagactgttgcgctg
tgggatctgaggaacctcaaactgaagctccactcctttgagtcccacaaagatgaaatc
ttccaggtacaatggtctcctcacaacgagacgatcctggcctccagcggcaccgaccgg
cgtctcaacgtctgggatctcagtaaaattggggaggagcagtccgcagaagatgctgag
gacggcccaccagagctgctgttcatccacggcggccacacagccaagatctccgacttc
tcctggaaccccaacgagccctgggtcatctgctcggtgtctgaggacaacatcatgcaa
gtctggcagatggcggagaatatctacaacgacgaggagccagacaacacccctgcatca
gaactggaggctcagggttcataa

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