Cyclopterus lumpus (lumpfish): 117725788
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Entry
117725788 CDS
T09199
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2 isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117725788 (ddx21)
03036 Chromosome and associated proteins [BR:
clum03036
]
117725788 (ddx21)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117725788 (ddx21)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
Pre-60S particles
Helicases
117725788 (ddx21)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117725788 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
IclR_C
Motif
Other DBs
NCBI-GeneID:
117725788
NCBI-ProteinID:
XP_034381619
Ensembl:
ENSCLMG00005004553
UniProt:
A0A8C2WRI9
LinkDB
All DBs
Position
3:complement(17719746..17729695)
Genome browser
AA seq
738 aa
AA seq
DB search
MPTKIIFETEDQAMDDGLDTVAEAKPQKKTKEGKKLKSKKLEDQEEQEDPDCEPPAPKKK
KKKDKLAVDLVNDHIDLNGSGNGVDTPKMIQKMAEGDTEKKNKKQKKAMAAAETNGHSTP
NTPVETPVQSSEDSASDSEKETKETPEQKEGAFSNFRISQFTIDKLKARGATYLFDIQIK
TFNSVYDGEDVIAQARTGTGKTFSFAIPLVEKLQTNAGAFTRGRAPKVLVLTPTRELAIQ
VAKDFKDITRKLALTCFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLQNNKLDLSKLEH
VVLDEVDQMLDMGFAEQVEEILSSSYEKDSESNPQTLLFSATCPPWVYEVARKYMRPGCK
HVDLIGKKTQKAATTVEHLAVACHWSQRAAVIGDVIQVYSGGNGKTIVFCETKKEVNELS
MNASIKQSSQTLHGDIPQKQREITLKGFRNGGFEVLVATNVAARGLDIPEVDLVIQCAPP
KDVESYIHRSGRTGRAGRSGVCICFYQRKEEDLLRHVEYKAGITFKRVGVPTASDIIKSS
SKDAVRFLDSVPVTAIGHFRASAEKLIEERGAVDALAAALAHISGATNLEQRSLLNSDAG
FTTVQMVCSQEMHNLGYAWKSIKEQLGEEFESHIHRMTFLKGKTGVCFDVPCAKVKEVQD
AWKDGRRWQLSVATELPELEEKQFSDRGGGNRGGGFRGGRGRGFGGGGGRSNGFRSGGGG
FSNKRGVHKRSFGEAFDY
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaaaaatcatctttgaaactgaagatcaagccatggatgacggcctggacacg
gtcgcggaggctaaaccccaaaagaagaccaaagaggggaagaagctaaaaagcaagaag
ttggaggaccaggaagagcaggaggacccagactgtgaacctccagcaccaaagaaaaaa
aagaaaaaagacaagctggctgtggacctagtgaacgaccacatagacttgaacggcagc
ggtaacggtgttgacacaccaaagatgattcagaagatggctgaaggagacacagagaaa
aaaaataagaagcaaaagaaagcaatggcagcggctgaaaccaacggacattccacccca
aacacccccgtcgagacaccggtccagtcaagcgaagattctgccagcgacagcgaaaaa
gaaacgaaggaaacaccagaacagaaggaaggggccttctccaacttcaggatctcccaa
ttcaccattgataaactaaaagctcgcggagccacttacttgtttgacattcagattaag
acattcaattctgtatatgatggcgaggacgtcattgcccaagcccgaacaggaacagga
aagactttctcatttgctatccctttggtggagaagctccagacgaacgcaggggcgttt
accagaggccgggctcccaaggtcttggtgttaactccaaccagagagttggctatccag
gtcgcaaaggacttcaaagacatcaccaggaagctggctctcacctgcttctatggaggc
agctcatacaacccacagcttgatgctatccgtaatggtatcgatattttggtcggtacc
cctggtcgcatcaaagaccacctccagaacaataaacttgacctctctaaactggaacat
gttgttctggatgaagtagaccaaatgttggacatgggatttgcagaacaggttgaagag
attttgtcttcatcatatgagaaagactctgaatccaacccacagactcttctgttttcg
gccacctgccctccctgggtttacgaggttgcacgaaaatacatgagaccagggtgcaaa
catgtagatctgatcggcaagaaaacacagaaagctgcaacaactgtagaacatctggcc
gtcgcgtgccactggtcacagcgtgcagctgtaataggggatgtgatccaggtttacagc
ggcggcaacggcaagacgatcgtgttctgtgagacaaagaaagaagtcaacgaactttcc
atgaatgcatccatcaaacagagttcccagaccctccatggtgatattcctcagaaacag
agagagataacactgaagggcttcaggaacggtgggtttgaggttctggtcgccaccaac
gttgcagcacgtggattagacatccctgaagtcgacctggtgatccagtgtgctccaccc
aaggatgtggagtcatacatccatcgttcaggacgtacgggccgagccggcagatctgga
gtctgcatctgtttctaccagaggaaagaggaggacctgctgcgccacgtcgaatacaaa
gccggtatcacattcaaacgagttggcgttcccactgccagcgatataatcaagtcctca
agcaaggatgctgtcaggtttctggactctgttccagttacagccatcgggcacttcaga
gcgtcagctgagaaactgattgaggagagaggagcagtcgatgctctcgctgctgccctg
gcacacatttctggagccacaaatcttgagcagaggtcactgctcaactctgatgctggt
ttcaccactgtgcagatggtgtgttctcaggagatgcataatctgggttacgcctggaaa
tctatcaaagagcagcttggagaagagtttgagagccacattcacagaatgaccttcctc
aaaggcaaaacgggagtttgttttgatgtcccatgtgccaaagtcaaggaggttcaggat
gcctggaaggacggtcgccggtggcaactgagtgtagccacagagctcccagagctggag
gagaagcagttcagtgaccgaggtggcgggaacagaggaggaggcttcaggggtggaaga
gggcgtggttttgggggaggtggtggccgtagtaatgggtttcggagtggtggcggtggc
tttagcaacaaaagaggagtacacaaacgcagcttcggtgaagcttttgattattga
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