Cyclopterus lumpus (lumpfish): 117726051
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Entry
117726051 CDS
T09199
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03013
Nucleocytoplasmic transport
clum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117726051 (upf2)
03015 mRNA surveillance pathway
117726051 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117726051 (upf2)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117726051 (upf2)
mRNA cycle factors
P-body specific factors
117726051 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
117726051
NCBI-ProteinID:
XP_034381948
Ensembl:
ENSCLMG00005011383
LinkDB
All DBs
Position
23:complement(14927915..14946530)
Genome browser
AA seq
1276 aa
AA seq
DB search
MPAERKRSLNMDEKDVCTFTNKDKEKEKEKEKERDGDRRPLSARDKAKDEAKMSGKKDGS
KEEKRKRMEEEKKKREEKERRKKEEEKQKAEEEQKKKEEEEKRQQEEEERRLQEEEAKRQ
REEEAALLKEKEEGHQLHQEAWERNQCRKELRSRNQNAQEGRPEEAFFSRLDSSLKKNTA
FVKKLRTLTEQQRDSLSHDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRY
TEFAPLLLQAWKKHFEARKEDKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKS
IIGSDRDTHTHVSVVISFCKHCGDDIAGLTPRKVKAATDKFGLGFPPSEIITIEKQQPFQ
NLLREYFTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEESATSYQKLLANT
QSLADLLDENMPELPQDKSVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVD
LKAFVPAILFKDNEKGKDKEEAKDKDAKDAASTTTTTEELELELEALDIADEPLELEGPD
EAESEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMN
TKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKD
QINIETKNKTVRFIGELAKFKMFSKTDSLHCLKMLLSDFTHHHIEMACTLLETCGRFLFR
SPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLHEYIR
KLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVA
YQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSGKFLGELYNYRMVESAVIFRTLFSF
ISFGINQDGSPSALDPPEHLFRIRLVCTVLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWK
KSTEVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLEEATKQVTDLEREVLVKLGLAMQ
RDGRSSALSEEDDDADDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTD
YLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGETVKVHQ
LDVAIPLQLKSQLKKGPREPCVGESEAEISDTMQFVMLTRKGNKQQYKILNVPLSSHLVA
NHFNQQQAEQEERMKMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPK
GAPNADLIFKTGGRRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgctcactaaacatggacgagaaagacgtttgcaccttcacc
aacaaggacaaggagaaggagaaggagaaggagaaggagcgagatggggacagaaggccg
ctgtccgcccgagacaaagccaaggacgaggccaagatgagcggcaaaaaagacggcagc
aaggaggagaagaggaagcgcatggaggaggagaagaagaagagggaggaaaaggagcgc
aggaagaaagaggaggaaaaacaaaaagcggaggaggagcagaagaagaaagaggaggag
gagaagaggcagcaggaggaggaggagaggaggcttcaagaggaggaggccaaaagacaa
cgcgaggaggaggcagctctcctgaaggaaaaggaggagggccaccagctgcaccaggag
gcctgggagcgcaaccagtgcaggaaggaactccgcagcaggaaccagaacgcccaagag
ggccggcccgaggaggccttcttcagccgcctggactccagcctgaagaagaacacggcc
ttcgtcaagaagctgcgcacgctcaccgagcagcagcgcgactcgctctcccacgacttc
ggctcgctgaacctcagcaagtacatcggcgaggccgtgagctccgtcgtggaggccaag
ctgaagatctccgacgtgggctgcgccgtccacctctgctcgctcttccaccagcgctac
accgagttcgccccgctgctgctgcaggcgtggaagaagcacttcgaggcccgcaaggag
gacaagtcgcccaacgtgagcaagctgcgcaccgacctgcgcttcatcgccgagctcacc
atcgtcggcctcttcacggacaaggaggggctgtcgctgatttacgagcagctgaagagc
atcatcgggtcggaccgcgacacgcacacccacgtgtcggtggtcatcagcttctgcaag
cactgcggcgacgacatcgccggcctgacgccccgcaaggtgaaagcggccacggacaag
ttcggcctgggcttcccgccgagcgagatcatcaccatcgagaagcagcagcccttccag
aacctcctgcgggagtacttcacctcgctcaccaagcacctgaagaaggaccaccgcgag
ctgcagaacaccgagaggcagaacaggcggatcctccattccaaaggggagctgagcgag
gaccgccacaagcagtacgaagagtccgccacttcctaccagaagctgctggccaacact
cagtctctggccgacctgctggacgagaacatgcccgagctgcctcaggacaagtccgtg
caggaggagcacggccccggcattgacatcttcacgcccgggaagcccggcgagtacgac
ctggaggggggcatctgggaggacgaagacgcccgcaacttctacgagaacctggtggac
ctgaaggccttcgtccccgccatcctcttcaaggacaacgagaagggcaaagacaaggag
gaggccaaagacaaggacgcgaaggacgctgccagcaccaccaccaccacggaggagctg
gagctggagctggaggctctggacatcgcagatgaacctctggagctggagggacccgac
gaggccgagagcgaagagctggccaagaagctgctggacgagcaagaacaagaggacgaa
gaggccaacaccgggtcccacttgaagctgatcgtggacgccttcatccagcagctcccc
aactgcgtcaacagagacctcatcgacaaggccgccatggacttctgcatgaacatgaac
accaagtccaacaggaggaagctggtccgggctctcttcaccgtgcccaggcagaggttg
gatctcctgcccttctactctcgcctggtggcgactcttcacccgtgcatgtcggacgtg
gccgaggacctctgctccatgctgaagggagacttccgcttccacattcggaagaaggac
cagatcaacatcgagaccaaaaacaagacggtccggttcatcggggaactggccaagttc
aagatgttctcaaaaaccgactcgctccattgtctcaagatgctgctgtctgacttcacc
catcaccacatcgagatggcctgcacgctgctggagacctgcggccgcttcctcttccgc
tcccccgagtctcacctgcgcaccagcgtcctgctggagcaaatgatgcgtaagaagcag
gcgcagcatctggacgcccgctacgtgacgatggtggagaacgcctactactactgcaac
ccgccgcccatggagaagacggtgaggaagaagaggccgccgctgcacgagtacatccgc
aagctgctctacaaggacctgtccaaggtcaccacggagaaggtgctcaggcagatgcgc
aagctgccctggcaggaccccgaggtgaagagctacctcatctgctgcatggtgaacatc
tggaacgtcaagtacaacagcatccactgcgtggccaacctgctggccggcctggtggcc
taccaggaggacgtgggcatccacgtggtggacggggtcctggaggacatccggctgggc
atggaggtcaaccagcccaagttcaaccagcggcggatcagcagcggcaagttcctcggc
gagctctacaactaccgcatggtggagtccgccgtcatcttccgcaccctcttctccttc
atctccttcgggatcaaccaggacggcagcccgagcgccctcgacccgccggagcacctg
ttccgcatccgcctcgtctgcacggtgctcgacacctgcggccagtactttgaccgcggc
tccagcaagaggaagctggactgtttcctcatctacttccagcggtacatctggtggaag
aagagcaccgaggtctggaccaaggaccacccgttccccatcgacatcgactacatgatc
agcgacaccctggagctgctgcggcccaagatgaggctcagctgctccctggaggaggcc
accaagcaggtcaccgacctggagagggaggtgctcgtcaaactaggtctggccatgcag
agggacggccgctccagcgctttgagcgaggaagacgacgacgccgacgacgacgaagag
ggcggcgccgagaccgaagagcagtcgggcaacgagagtgaaatgaacgaacaggaagag
gacgaagggtccgagaacgaggaagaggagagggaggaagaggaggaggagaacaccgac
tacctgacggactccaataaggaaaatgagaccgacgaggagaacaatgaggttaccatc
cgcggcggtggactgaagcacgtggcgtgcgccgaggacgaggacttcattcaggctctg
gacaagatgatgctggagaacctgcagcagcgcagcggcgagacggtgaaggtgcaccag
ctggacgtggccatccccctgcagctgaagagccagctgaagaagggcccccgagagccg
tgcgtcggcgagagcgaggcggagatctccgacaccatgcagttcgtcatgctgacgcgc
aaaggcaacaagcagcagtacaagatcctgaacgtgccgctgtcctcccacctggtggcg
aaccacttcaaccagcagcaggccgagcaggaggagcgcatgaagatgaagaagctcacg
ctggacatcaacgagcggcaggagcaggaggactaccaggagatgatgcagtccctcgcg
cagcgtccggctccggccaacaccaaccgggagcgccggcctcgctaccagcacccgaaa
ggcgctcccaacgccgacctcatcttcaagaccggaggaaggagacgctga
DBGET
integrated database retrieval system
