Cyclopterus lumpus (lumpfish): 117726081
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Entry
117726081 CDS
T09199
Symbol
smc3
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04110
Cell cycle
clum04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117726081 (smc3)
04114 Oocyte meiosis
117726081 (smc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
clum03036
]
117726081 (smc3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
clum00535
]
117726081 (smc3)
Chromosome and associated proteins [BR:
clum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
117726081 (smc3)
Meiosis-specific proteins
Cohesin complex and associated proteins
117726081 (smc3)
Proteoglycans [BR:
clum00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117726081 (smc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
AAA_29
OmpH
MFD_D3
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
117726081
NCBI-ProteinID:
XP_034382066
Ensembl:
ENSCLMG00005000770
LinkDB
All DBs
Position
1:complement(9216425..9240352)
Genome browser
AA seq
1223 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYERKEESISLMKE
TEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDE
LSSKRETCGDKSRQLRDAQQDARDKVEETERVVRELKSKISAMKEEREQLSAERQEQIKQ
RTKLELKTKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELQETEPKFNMVKEKEERG
ISRLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDLE
DTETSKEKNLEQYTKLDQDLNEVKTRVEELDKKYYEVKNRKDELQSERNYLWREENAEQQ
ALAAKREDLEKKQQLLRAATGKSILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNFE
CEPAFYTCVEVTAGTRLFYHIVETDEVSTKILMEFNKMNLPGEVTFLPLTKLDVRDTAYP
ETNDAIPMISKLRYSNPFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSHR
GALTGGYYDTRKSRLELQKDMRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQI
ETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAEL
GTDLLSQLSLEDQRRVDDLNDEIRQLQQDNRQLLNERIKLEGIMTRVETYLNENLRKRLD
QVEQELNELRETEGGTVLTATTSELESINKRVKETLSRSEDLDTLVDKTEIEIKDHIKSM
ERWKNIEKDQNDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTLT
LKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGHKSIMELMNVL
ELRKYEAIQLTFKQVRGSPDCVKNFSEVFLKLVPGGKATLVMKKGDAEXAASLKMRVREV
QTASGGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKC
DPAPFYLFDEIDQALDARYCTSISDMIVELAGHAQFITTTFRPELLESADKFYGVKFRNK
VSHIDVITAEQAKDFVEDDTTHG
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgtacatcaaacaggtcatcatccagggcttccgaagttacagggaccagactgtggtc
gacccgttcagtccaaagcacaatgtcatcgttggaagaaatgggtcaggaaaaagtaac
tttttctatgccatccagtttgtgctcagtgatgagttcagccacctgcgacctgaacag
cgcctggccctgctccatgagggaactggtcctcgtgtcatttcagcttttgtggagatt
atatttgacaactctgacaaccggctgccgatcgacaaggaggaagtctcccttcgccgc
gtcattggcgcaaagaaggaccagtacttcttagacaagaagatggttactaagaatgac
gtcatgaatcttctggagagtgctggcttctcccgcagcaacccttactacatcgtcaag
cagggaaagatcaaccaaatggccacagcccccgactcccaacgtctgaagctgctgaga
gaggtggcagggacacgggtgtatgagcgcaaggaggagagtatttctctgatgaaggag
acggaggggaagcgagagaagatcaatgagctgttgaagtacattgaggagcgtctccat
accctggaggatgagaaagaggagctggctcagtaccagaagtgggacaagatgagaaga
gccctggagtacaccatctacaaccaggagctgaatgaaacccgcgccaaactggatgag
ctgtcaagcaagagggagacctgtggagacaaatccagacagctgcgtgatgctcagcaa
gatgcccgagacaaagtcgaggagacggagcgtgttgtgcgagagctgaagtccaagatc
tctgccatgaaggaggaaagagagcagctgtcggccgagcgccaggagcagatcaagcag
aggaccaagctcgagctgaagaccaaggacctgcaggacgagctggcaggcaacagcgaa
cagaggaaacgcctgctgaaggagcggcagaagctgcttgagaaaatcgaggagaagcaa
aaagagctgcaggagactgaacccaaattcaacatggtgaaggagaaagaggagcgaggc
atatccagactggctcaggctacgcaggagaggacagacctgtatgccaagcagggccgt
ggcagccagttcacctctaaagaagagagggacaagtggattaagaaggagttgaagtct
ctggaccaggccatcaatgataaaaagaggcagatcgcagccatccacaaagacctggag
gacacggagaccagcaaggagaagaacctcgagcagtacactaaacttgatcaagaccta
aatgaagtcaagacccgcgttgaggagctggacaaaaagtattatgaagtcaagaacagg
aaagatgagctgcagagcgaaagaaactacctgtggcgtgaggagaacgccgagcagcag
gccctggctgccaaacgagaggacctggagaagaaacagcagctccttcgagcggctact
ggcaagtctattctcaacggcattgacagcatcaacaaagtccttgagcatttccgtcga
aagggcatcaaccagcatgtcatcaatggttaccacggcatcgtcatgaataactttgag
tgtgagcctgccttttacacctgtgtggaggtgacagctggtaccagactgttctatcac
attgtggagactgacgaggtcagcaccaaaatactgatggagttcaacaaaatgaacctg
cctggagaagtcacattcctgcccctgaccaagctggacgtcagggacacggcctaccca
gagaccaacgacgctatccccatgatcagcaagctgcgctacagcaacccctttgacaag
gccttcaagcacgtgtttgggaagactctgatttgtcgcagcatggaagtttccacccag
ctggccagagctttcactatggactgtataactctcgagggtgaccaggtgagccaccgg
ggagctctgacaggaggctactacgataccagaaagtctcgtctggagctgcagaaagac
atgaggaaggctgaggaggagctgggtgagctggaagccaagctcaatgagaacctgcgc
aggaacattgaacgcatcaacaatgagatcgaccaactgatgaaccagatgcagcagatc
gagacgcagcagaggaagtttaaggcatccagagacagtattctgtcggagatgaagatg
ctgaaggagaagcggcagcagtcagagaagacgttcatgcccaagcaacgcagtctccaa
agtctggaggccagtctccatgccatggagtccaccagggagtcactgaaggccgagctc
ggtacagatctgctctctcagctcagcctggaggaccagaggcgcgttgatgacctcaac
gacgagatccgtcaactccagcaggacaacagacagttgttgaatgagaggattaagctg
gagggcatcatgaccagagtggaaacgtatctcaacgagaacttgcggaagcgtcttgac
caagtggagcaggagctaaatgagctgcgagagaccgagggaggcacggtgctcacagcc
acaacatctgagctggagagcatcaacaaacgtgtcaaggagactttgtcgcgatcggaa
gatctggatactctggttgacaagacagagatagagatcaaggaccacatcaagagcatg
gagcgctggaagaacattgagaaggaccagaatgacgccatcaaccacgacaccaaggag
ctggagaagatgaccaacaggcagggcatgctgctcaagaagaaagaagagtgcatgaag
aagatcagagagctcggctcgctgcctcaggaggcctttgagaagtaccagaccctcaca
ctcaaacagttgttccgaaaactggagcagtgcaacacagaactgaagaagtacagtcat
gtcaacaagaaagctctggaccagtttgtcaacttctctgagcagaaggagaagctgatc
aagcgtcaggaggagctggaccgcggccacaaatccatcatggagctcatgaacgtcctg
gagctgcgcaagtacgaggccatccagctcacattcaaacaggtacgcggctcgccggac
tgtgtcaagaacttcagtgaggttttcctgaagctggtcccaggtggcaaagctacattg
gtgatgaagaagggtgatgctgaannggcagccagtctcaagatgagggtgagggaggtg
cagacagcgagcgggggctccggttcacagagcagcgttccttcagtggaccagttcact
ggagtcggcatcagggtgtcgttcacagggaagcagggcgagatgagagagatgcaacag
ctttctggaggccagaagtcgctggtggctctggccctgatatttgccattcaaaagtgt
gacccggctcctttctacctgtttgacgagatcgatcaggccctcgatgccaggtattgc
acgtccatctcagacatgatcgtggagctagcaggccacgcccagttcatcaccaccacc
ttcaggcccgagctgctggagtctgctgacaagttctacggcgtcaaattcagaaacaag
gtgagtcacattgatgtgatcacagcggagcaggctaaagactttgtggaggatgacacc
acccatggttaa
DBGET
integrated database retrieval system
