Cyclopterus lumpus (lumpfish): 117726094
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Entry
117726094 CDS
T09199
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04510
Focal adhesion
clum04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117726094 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117726094 (lamb1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
117726094
NCBI-ProteinID:
XP_034382052
Ensembl:
ENSCLMG00005018902
LinkDB
All DBs
Position
23:complement(14269485..14292553)
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AA seq
1781 aa
AA seq
DB search
MSLIILFITTLALRCPVGAQQLPDYADVCTEGSCYPATGDLLIGRAHKLSVSSTCGLEHP
ERFCIVGHLEEEKKCFVCDSRQMFDDDSNQVSHTIANLVTTFAHNRLKTWWQSENGVENV
TIQIDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTWQVYRYFAYDCESSFPGVSSGP
MGKVDEIICDSHYSDIEPSTEGEVIFRVLDPVFEIEDPYSLRIQNMLKITNLRVKFLRLH
TLGDNLLDSREEVTEKYYYSLYDMVVRGNCFCYGHASECAPIDGAATGVEGMVHGRCVCN
HNTEGLNCEHCQDFYHDLPWRPAEGRNSHACKRCECNQHSASCHFDSAVYATTGNVSGGV
CDDCRHNTVGRRCEQCAPFYHQHPNRDLRDPNVCEPCNCDPAGSLQGGLCDSHTNVPAGL
ISGQCRCKANVEGERCDHCRRGHHGLGQGPHGCLPCTCNQLGTLSGGNSCDSDTGRCFCK
RLVDGHNCNECLPQHWGLSNDMDGCRSCDCDQGGAVNNNCDPHSGQCVCREHMFGRRCDQ
VESGFYFITLDHYTYEAEDAKHGPGVTVVPRPYPLDRSPTWTGMGFVNVPEGAYLEFTVN
NVPESMDYDILIRYEPQLPEQWEQVNVRVQRPVFNPPSYSAHCDNPIQSGDDQSISLPPG
SRHVLLVRPVCFEQGLNYTLHLTLPLYSSVSDVQSPYTLIDSLVLIPRVRELDMFHGIDG
DGAWDTFQRYRCLESSQSVVKSPLTDICNDYIFSVSALLHKGAIACQCDPQGALSAVCEP
SGGQCRCRPSVVGRNCDHCAPATFLFSPAGCRPCGCDPLGSVSAFCHEATGQCECVPGAT
GRQCSHCLPGFWGFPQCRPCHCNGHSEYCHPQTGECQGCRDFTRGHHCDRCLGGYHGDPE
LGSGGHCRPCMCPDGPRSGRQFSDSCYLLATTNQLVCVCSPGYKGARCDECASGYFGNPA
VPGGRCMPCQCNGNIDMHDPGSCDAQTGACLKCLYHAEGYGCQHCKPGYYGDAATQSCRK
CMCYSVGTAPRACPSPDECECDQRSGQCPCRPNVVGQNCDACAADTWNIAGGAGCRRCDC
DPVHSSGSSCDEITGQCLCKPGFGGKTCRECRELFWGDPEVKCHACDCDSRGISSDQCHR
ATGQCTCVEGVSGPRCESCARGYQGEFPTCEPCHHCFAVWDTVVGELTNQTRRLELQVTQ
LQTSGVTAPYKDLVSSLETNVKAVRDIVESNPAAVKLEQIQELMHEITGVMSYLNGKLNT
TEETAILLRGDANATDANLNALTGEADQLELRVRELRQQVYNFKNANIQGAMDTIAAAHV
ESTTAERRANTSTSNPGNTVEESAAVRKATEDRLSGAQKEFDRKHQRNSQKLDKLSTELD
TFDLTPLSEQTCGGAAEGDGCSGSPCGGLGCVGEDEAPRCGGEGCGGLATTSRTALKSAK
DLDQEILAASQEVDKLSRMVWEANNRANQAKVNALEVLVKSNRSKERVEQSNQQLRHLIK
EIRDLLTNDKVEVSVIEAVANEVLALEMPTSTEKLQELTEEIREKVDTLTSVETILSQSA
EDIQAAETLLEQAKAASEEASTAKEAADMVKAALEETERAQSIAMDAILLAQNNTKGTLD
LLISVESETAVSELKLGNTTGRLVQLEREVGLLRQNSLEVNRLAESADWITDQARLNAEE
AQQEFDMEVKDRLVDVEDLVEDKGESVLQARRRADELQQEAKELLAQSSSKLQRLGELEG
SYEANQLILEAKAAELAELERSVRRVLDEISTKVTLYSTCL
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcataatcctctttatcacaactttagccctgcgatgccccgtcggggcgcag
cagctgccggactacgcggacgtgtgcacggagggcagctgctacccggccacaggtgac
ctgctgatcggccgcgcgcacaagctctccgtgtcctccacctgcggcctggagcacccg
gagcgcttctgcatcgtcgggcacctggaggaggagaagaaatgtttcgtgtgcgactcc
aggcagatgttcgacgacgacagcaaccaggtcagccacaccatcgccaacttggtcacc
accttcgcccacaaccgcctcaagacctggtggcagtcggagaacggtgtggagaatgtg
accatccagattgacctggaggccgagttccacttcacacacctgatcatgacatttaag
acgtttcggccggctgccatggtgatcgagcgctccatggacttcgggaaaacgtggcag
gtttatcgatacttcgcctacgactgcgagtcgtccttccccggcgtgtcctcggggccg
atgggcaaagtggacgagatcatctgcgactcccattactcggacatcgaaccgtccaca
gagggggaggtgatatttcgggtgctggaccccgtctttgagatcgaggacccctacagc
ctgaggatacagaacatgctgaagatcaccaacctccgggtgaagttcttgaggctccac
actttgggcgacaacctgctcgactcgcgcgaggaggtgacggagaagtactactactcc
ctctacgacatggtcgtccgcggcaactgcttctgctacggccacgcctccgagtgcgcc
ccgatcgacggagcggcgaccggagtcgagggcatggtccatggccgctgtgtgtgtaat
cacaacaccgagggactgaactgtgagcactgccaggacttctaccacgatttgccgtgg
agacccgccgagggccgaaacagccacgcctgcaagaggtgcgagtgtaaccagcactcc
gcatcgtgccacttcgactcggccgtgtacgcgaccaccggcaacgtgagcggcggcgtg
tgcgacgactgtcgacacaacacggtgggccggcggtgcgagcagtgcgcccccttctac
caccagcacccaaaccgcgacctgagggaccccaacgtctgcgagccgtgtaactgtgac
ccagccgggtctctgcagggcggactgtgtgactcgcacacaaacgtgccagccggactg
atctcaggccagtgtcgatgcaaagccaacgtggagggggagcgctgtgaccactgcagg
cggggacaccacggactgggacaggggcctcacggctgcctgccttgcacttgtaaccag
ctgggcactctgtcgggaggaaactcctgtgattcggacacaggaaggtgcttctgcaaa
cgcctcgtcgacggacataactgcaatgagtgcctgccgcagcactggggtctgtccaat
gacatggacggctgcagatcatgtgactgcgatcagggcggggctgtcaacaataactgt
gaccctcactcgggacagtgcgtgtgcagggagcacatgtttggaagacgctgcgatcaa
gtcgagtccggcttctacttcatcactctggaccactacacctacgaggcagaggacgcc
aagcatggacctggtgtgacggtggtaccgaggccttatcctctggatcgcagtcctacg
tggaccggtatgggcttcgtgaatgttccagaaggagcctacttagagttcaccgtgaac
aacgtcccagagtccatggactacgacatcctcattcgctatgagccccagctgccagag
cagtgggagcaggtgaacgtccgagtgcagcgtcccgtcttcaaccctccaagctactcc
gctcactgcgacaaccccatccagagcggagacgaccagtccatctctcttccacctgga
tccagacatgtgctgctggtgaggccggtgtgtttcgagcaaggactgaactacacgctg
cacctcactctgcctctctactcgtctgtcagcgacgtccagagcccgtacacgctcatc
gactctttggtgctgataccccgggtcagggagctggacatgttccatgggatcgacggt
gacggagcgtgggatacgttccagcgctaccggtgtctggagagcagccagagcgtcgtc
aaaagccccctgaccgacatctgtaacgactacatcttcagcgtctccgctctgctgcac
aaaggagccattgcatgccagtgtgaccctcagggtgcactcagcgctgtgtgcgagccc
agtggaggtcagtgccggtgtcgacccagcgttgtcggcaggaactgcgaccactgcgcc
cccgccacgtttctgttcagccccgccggctgcagaccttgcggttgcgaccctctgggc
tccgtcagcgccttctgccacgaggcgacaggccagtgcgagtgcgtccccggggccact
gggcgccagtgttcccactgcctgccgggcttctggggcttccctcagtgcaggccgtgc
cactgcaacggccacagcgagtactgccaccctcagaccggagagtgtcagggctgcaga
gacttcaccagaggacaccactgtgacaggtgtctgggcggttaccatggtgacccggag
ctgggttcaggtggacactgccgtccctgtatgtgccccgatgggccgcgcagtggacgg
cagttctctgacagctgttaccttctggctactacgaaccagctggtgtgtgtgtgcagc
cctggctacaaaggtgccaggtgtgacgagtgtgcctccggttatttcggaaaccccgcg
gtgcccggtgggcgctgcatgccctgccagtgtaacggcaacatcgacatgcacgacccg
gggtcctgtgacgctcagacgggcgcctgcctcaagtgcctgtaccacgcggagggctac
gggtgtcagcactgcaaaccgggttactacggcgacgctgccactcagagctgcaggaag
tgcatgtgttactcggtgggcacggcgcctcgggcctgcccgtcccccgatgagtgtgag
tgtgaccagcgcagcggtcagtgtccctgccggcccaacgtggtcggccagaactgcgac
gcctgcgccgccgacacgtggaacatcgccggcggggcgggctgccggcgctgcgactgc
gaccccgtccactcctccggatcctcctgcgacgagatcacaggacagtgtttgtgcaaa
cccggttttggtggcaagacgtgtcgggaatgcagagagctcttctggggggatccagag
gtcaaatgtcacgcttgtgactgcgactctcggggaatctccagcgatcagtgccatcgc
gccacaggtcagtgcacctgtgtggagggcgtgtccgggccgcgctgtgagagctgcgcc
aggggctaccagggggagttccccacctgtgaaccctgccaccactgcttcgcggtctgg
gacaccgtcgtcggcgagctgaccaatcaaacccgacgcctggagctccaagtgacgcag
ctccagaccagcggggtgacggcgccatataaagacttggtcagcagcctggagacgaac
gtcaaagctgtccgagacatagtagagagcaacccggcagcggtgaagctggagcagatt
caggagctgatgcatgagatcaccggtgtgatgtcatacctcaacggaaagctgaacacg
acggaggagaccgcgatccttctccgcggtgacgccaacgccaccgacgcaaacttgaac
gcgctgactggtgaggccgaccagctggagctgagagtccgggagctgagacagcaggtg
tacaatttcaagaacgccaacatccagggtgccatggacaccattgcagctgcacacgtg
gagtctactacggctgagcgccgcgccaacacctccaccagtaatcccggaaacaccgtg
gaggaatcggccgcagtacggaaagccacagaggacagactgagcggcgcccagaaggag
tttgaccgcaagcaccaaaggaactctcagaagctggacaaactgtccacggagctggac
acatttgacctgacgccacttagcgagcagacatgtggtggtgcagctgagggcgacggc
tgctccggttccccctgcggtggtttgggttgcgtcggcgaggacgaagctcctcggtgc
ggcggagaaggatgcggaggcctcgccacgacttcccgaaccgcactcaaatccgccaaa
gacctggaccaggagatcctcgccgccagtcaggaagtggacaagctctccaggatggtg
tgggaagccaacaaccgcgctaaccaggccaaggtgaacgctctggaggtgctggtcaag
tccaaccggagcaaagagagagtggagcagagcaaccagcagctccgtcacctcatcaag
gagatacgagacctgctcaccaacgacaaggtggaggtttcggtgatcgaggcggtggcc
aacgaggtgctggctctggagatgccgacctccaccgagaagctgcaggagctgacggag
gagatccgggagaaggtcgacactctgaccagcgtggagacgatcctcagtcagagcgcc
gaggacatccaggccgcggagacgctgctggaacaggccaaggccgccagtgaggaggcg
tcgaccgcgaaggaggcggcggatatggtgaaggccgccctggaggagaccgagcgtgct
cagagcatcgccatggacgccatcctactggcccagaacaacacgaagggcaccctggac
ctgctgatctctgtggagtcggagacggccgtgtcggagctgaagctcggcaacaccacg
gggcgcctggtccagctggagagggaggtcggcctgctgagacaaaacagcctggaggtc
aaccgcctggcggagtcggccgactggatcaccgaccaggcccgactgaacgcggaggag
gcccagcaggagtttgacatggaggtgaaagacagactggtggatgtcgaggacctggtg
gaggacaaaggggagtcggtgctgcaggcgaggaggagagcggacgaactgcagcaggaa
gccaaagagctgctcgctcagagcagcagcaagctgcagagactcggagagttggaaggt
tcctacgaggccaaccagctcatcctggaggccaaagctgcagagctggcggagttggag
cgaagcgtccgccgggtcctggatgagatcagcaccaaagtgacgctgtacagcacctgt
ctgtga
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integrated database retrieval system