Cyclopterus lumpus (lumpfish): 117726244
Help
Entry
117726244 CDS
T09199
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117726244 (pdzrn4)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117726244 (pdzrn4)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117726244 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117726244
NCBI-ProteinID:
XP_034382298
LinkDB
All DBs
Position
23:complement(9826877..9859149)
Genome browser
AA seq
818 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYDIAQVNGRNFSKVDHEEAVVEAIRRDPIVVQVLRRAPARAT
AAVALHHGGAPQDVCLADVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNIPAEVERTEEYEYEEVELCRRNSLEKLGLTLCYRTDDEEDSGIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDRERAVALLSSEEARSIILLVTRPEIQLEEE
VWLDDEQQELVEELKMEILEERRKERRFDDGDEHLAEEEMTTDTATCSSNNQDKDSGFGH
STDSPDHQPLLARLHRRSPAQCLRERWRVEHPHSRRGTAVPQDTQGPRTLSKGQGHEGVI
SIRKGGGGSLGLENHFQQLLELKCQIRNGGECGVYSIRHSIECSVTEQEVDEDVIDGVGG
GNGVEQELRMLNEELCSIELECQSIMQAHQLRQAHQLDPAQPESCSPGRSPKDGLKRKGR
LADIHEYPERSDSDRIREKDSSSAYNTAESARSTPLGMERSPDHSLNRHICITNQKNLRL
ASSTPSSPISIPNPQGTPSCSRPADPGTVISSSPDQSNPSRSESDPAMPADDERCEKKGR
SRDSRRGLPYGSYQTTPYPGQGGSRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPVHRT
GRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKMG
RYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPASGAEGRKEVNILELSHKKMMKK
RNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaagaacactacaaactgctgtatgat
attgcacaggtgaacgggcgcaacttctccaaggttgaccatgaggaggcagtggtggag
gccatcaggcgagaccccatcgttgtccaggttctccgacgagcccccgccagagcgacg
gctgctgttgcacttcaccatggcggcgcgccacaggatgtgtgtttggcggatgtttgc
acacagacggacatcaccttcgagcacatcatggcgctggcgaagcttcggccggctact
cctcccgtcccggacatctgtccgttcctattgtctgacagttgtcattccatccacacc
atggagcatgagttttatgaatgtccagagtacctgtccaatatcccagcagaagtggag
aggactgaagagtatgagtatgaggaggtggagctgtgcaggcggaacagcctggagaag
cttggcttgacactgtgctacaggaccgacgatgaggaggacagcggcatctatgtcagc
caggtggagccaaatagcatagcagcaagagatggacgcatcaaggaaggagatcgtatt
ctacagataaatggctgtgaagtgcaagacagagagagagccgttgccttgttgtcaagt
gaagaagcaaggagcatcatactactggtaacaagaccagaaatccagctggaggaggag
gtatggctggatgacgaacaacaggagcttgtggaggagctgaagatggaaatcctggag
gagaggaggaaggaacgtcgctttgacgatggagatgagcatctcgctgaagaagagatg
acaacagacacagccacgtgttcctccaacaaccaagacaaagacagtgggtttggtcac
agtacagacagtccagatcaccaaccactgttggctagactccacaggaggagcccagcc
caatgcctgagagagcgctggcgggtagagcatccacactcaagacgggggactgcagtg
ccacaggacacccagggtccgaggacattgtccaaaggccaaggccatgaaggggtcatc
agcattcgcaaaggtggaggagggagtttaggtttagagaatcactttcagcaacttctg
gagctcaagtgtcaaatccgtaatggaggcgagtgtggagtgtactccattcgacacagt
atagagtgcagtgtcactgagcaagaagtggatgaagatgttatagatggtgttggagga
gggaacggagtggagcaggagttgaggatgctgaatgaggaactgtgcagcattgagctt
gagtgccagagcatcatgcaggcacatcagcttcgccaggcccaccagctggaccccgca
caacccgagtcctgctcaccaggacgaagcccaaaagacggactcaagcgaaaaggccgg
ttggccgacatccatgaataccctgagcggtcggacagcgacaggatacgggaaaaggac
agctccagtgcctacaacacagccgagagtgcgcggtcgacacctttaggaatggagaga
tctcctgatcattctctgaatagacacatctgcatcaccaaccagaaaaaccttagactg
gcttcctccacaccctccagccccatctctatccccaatccccagggtacacccagttgt
agccgaccagcagaccccggcactgttatctccagcagcccagaccagagcaacccttcc
cggtctgagtcagaccctgccatgcccgcagatgatgagaggtgtgagaagaaagggagg
agcagagattccaggagggggcttccctatggttcttatcagacaacgccctatccaggc
cagggaggatccaggcaacttcagagttacatgcagctgttacaacaacactcatccctg
gagtattcccaaagtcagctgagtctgctcagtgtctgcagagatcccgttcaccggacg
ggacgccctggggaaccccgtctagagtggaaggtcaaagttcgggctgacggcacgcgc
tacgtggcccggaggcccgcccgcgaccgcattctgagggagcgggcgctaaggatccga
gaagagaggagcggaggcatgaccacagatgacgacgctatgagcgagatgaagatgggc
cgctactggagcaaagaggagaggaagcagcacctggcgcgggccagggagcaaagaaag
aggagggagttcatgcaaaagagccgccttgagtgtctcaaggaggggccggccagcgga
gcggagggcaggaaggaggtcaatatcttggagctcagtcacaaaaagatgatgaagaaa
cgaaacaaaaagatcctggataactggatgaccatccaggagctgatgagccatggggct
agagtcccagagggctccaaagtacataacgctttcctatctgtcacaactgtctag
DBGET
integrated database retrieval system
