Cyclopterus lumpus (lumpfish): 117726391
Help
Entry
117726391 CDS
T09199
Name
(RefSeq) LOW QUALITY PROTEIN: transcription intermediary factor 1-alpha-like
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
clum01001
]
117726391
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117726391
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117726391
Protein kinases [BR:
clum01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
117726391
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117726391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
PHD-1st_NSD
zf-C3HC4_2
zf-C3HC4
PML_CC
zf-RING_2
ParB
Motif
Other DBs
NCBI-GeneID:
117726391
NCBI-ProteinID:
XP_034382530
LinkDB
All DBs
Position
23:6586546..6597741
Genome browser
AA seq
1122 aa
AA seq
DB search
MDESAENVDNDDIVIIVENEAESLPAEEERLKPQGTFGLMDTCPICKLSFHNREPKLLPC
LHSFCKRCLPAPFRSADPRRDSQGQVDNKSLGAVRCPVCRQECWEMDMLDNFFVKDSVEV
PSSTVEKSSQLCISCDDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEMSPE
AVGMSTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLDDAYRNHKHHLE
NMTHQLQEKRKAIEDVSTCISTGLQQVEENRKSVTNEIKKSICTLIMEINRKGKILVNQL
EALTKDHEVGLKKQQDDVNSLSRHLDHVINFTKWATASHSGTALLYCKRLILFQIHYLMR
ASCNPSIVPQSSVRFQCRSGFWATNVDLGSLVVERGQGRPPIPNHPAGPRAEAPPGGLSV
SAQQRQSTLAQLQMHVDKLAQQPNRQPPPNHWSWYQNVRVPGQPGPPPQTRPIHGGSSPS
QGPQSLGQPGRRYGSSYPNPRSPTSSMLHNTGFPPAQSLRDLIHSSGFPPKPMDVLQGTS
RYPPPLSAGAATQMSLQQRGLTEPSFLKRTEAGGSVPSITISIPKPSFAPSLASATTDKT
STFNHTAVLARQNSPMAKPSSSDRGTGTTSWRQSSEPPSAPQAKRRRRSSPGPVIVIKDE
PEDEDDVRFVQSSVGSSLPDSSTGGQSKPRPQLKAPAPDPVPASESGAESSRAVKEQRPQ
PAAQPESEKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVFHLACHIPALNESPSGEWFC
SLCRDLASPEMEYDCDSKDDPVCEGFPPTGRRRCERLLLRLFCNDFSTDFQQPATPSETR
RYKELIKTPMDLSIVKKKLELKSQEGQCYNGPEGFVADVRLIFFNCAKYYKATSEVGSAG
LYLEDYFEEQLKLVYPDKVFPGGREEQMIPPLEEEIDEEEEMTAQGMAPMEDDKPQSPAG
TGIPPVEEDLPALEEATAPAEEERSETEEKVVDASEKGMEATTAAAAAATTTATAAAAAA
TATEGDAPSAEEAEEAEEAEEAEQAEESEQAEEIPVKEMESSPAAVGETKEEDPPKSPKE
ESPELPTQTPVGSPELPTETPVDAPETQEESAPADTAKEEQG
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagtgctgaaaatgttgacaacgacgacattgtcattattgtggagaacgag
gcggaaagtttgccagcggaggaggagaggctgaaaccgcaaggcaccttcgggctcatg
gacacctgtcccatctgcaagttgagcttccacaacagagagcccaaactcctgccgtgt
cttcactcgttctgcaaaaggtgtctccctgcccccttcagaagtgctgacccgaggcgt
gattcacaaggtcaagtcgacaacaaatcattgggtgccgttcgatgtccagtatgcaga
caggaatgctgggagatggacatgctggataatttctttgtcaaggactctgtcgaggtg
ccgagcagcaccgtggagaaaagcagccagttgtgtatcagctgcgatgacaacaccgag
gcaacggggtactgcgtggagtgtgtggagttcctgtgtgtgacgtgtattgaggcccac
caaagggtcaagttcaccagggatcacaccatacggcagaaggaagagatgtctccagaa
gcagtaggtatgtccacacagaagcctgtgttttgtgacgtccacaagcaggagcccctg
aagctgttttgtgagacgtgtgaccgactcacctgtcgggactgtcagctgcttaaacac
aaggatcacaactaccagtttttggatgatgcatacaggaaccataagcatcatctggag
aacatgacgcatcagttgcaagagaaaagaaaggccatcgaggacgtgtccacctgtatc
agcactggactccagcaagtcgaggaaaaccggaagtctgttaccaatgaaataaagaaa
tccatctgtaccttgattatggagatcaacaggaaaggaaagattctggtgaaccagctt
gaggctctgactaaagaccacgaggtgggtttgaaaaagcagcaagatgacgtcaactct
ctgagccggcacctagaccacgtcatcaacttcactaaatgggccacagccagccatagt
ggaacagccctgctgtactgcaagagactgatccttttccagatccattacctgatgaga
gcaagctgtaatccctccatcgtccctcagagttctgttcgctttcagtgtcgctccggt
ttctgggccacaaatgtcgaccttggttctttggttgtagaaagaggccagggccggcca
cccatccccaaccacccggcaggtcccagagcagaagcgccccctggaggtctttccgtc
tcagctcagcagcgacagagcaccttggctcagctgcagatgcatgtggataagcttgcc
cagcaacccaaccgacagcccccccctaaccactggtcctggtaccaaaatgtcagggtc
ccgggacaacccggccctccaccccaaaccagacccatccacggagggtcctccccctcc
caaggccctcaaagcttgggacagcccgggcgcagatacggaagctcttaccccaaccct
agaagccccacatcatccatgctacacaacacaggattcccccctgctcagtctctgaga
gatctgatccatagctccggcttcccaccgaaacccatggatgtgttgcagggtacgtcc
cgctacccaccgcctctgtctgcaggagcagcgacacagatgtcactacagcagcggggc
ctcacggagccctccttcctgaagaggactgaggcgggtggatctgtcccctccatcacc
atctctattcccaaacccagcttcgctccaagtctagcttcagcaaccacagataaaaca
agcacatttaatcacacagcagttctagcaaggcagaactccccaatggccaaaccatcg
tcctcagacagaggcacagggacgacttcctggaggcagagctctgagcctccatctgcc
ccccaagccaagcgacgaagaaggtcgtccccagggcccgtcatcgtcatcaaggatgaa
ccagaggacgaggatgatgttcgatttgtgcagtccagcgtaggctccagcctgccggac
agcagcaccgggggtcagtcaaagcctcggccgcagctaaaggcacctgcaccagacccg
gtgcctgcatcggagtctggagccgagtcaagcagagcagtcaaagagcagcggccgcag
cccgcagcgcagcccgagtctgaaaagagagcggagccggaggaagaccccaatgaggac
tggtgcgccgtctgtcagaacgggggggaactgctctgttgcgacaagtgccccaaagtc
ttccatctggcctgccacattcccgctctgaatgagtcccccagtggggagtggttctgt
tcgctctgccgagacctcgcctccccggagatggagtacgactgtgacagcaaggacgac
cccgtctgtgaagggttcccacccactggcaggaggcggtgtgagaggctgctgctacgt
ctgttctgcaatgacttcagcactgacttccagcagcccgctactccatcagagacgaga
cgttacaaagagctgatcaagaccccgatggatttgtcaattgtcaagaagaaactggag
ttgaagtcgcaggaaggtcaatgttataacggtccagaggggtttgtcgcagacgtccgg
ctcatattcttcaactgtgcaaaatactacaaggcgacctccgaagtggggagtgcaggc
ttgtacttggaggactactttgaggagcagttgaaactagtctacccggataaggtgttc
cccggagggagggaagaacagatgatccctcccctcgaggaggagatagatgaagaggaa
gagatgacggcgcagggcatggctcccatggaagacgataaaccacaaagtcccgcggga
acaggaatcccgcctgtggaagaagacttgccggctctggaagaagcaacagcccctgca
gaggaggaaaggtcagaaacggaggagaaggtggttgatgcgagtgaaaaggggatggag
gcaacaacagcagcagcagcagcagcaacaacaacagcaacagcagcagcagcagcagcc
actgccaccgagggagatgcaccttctgcagaggaggcagaggaggcagaggaggcagag
gaggcagagcaggcagaggagtcagagcaggcagaggagattcctgtgaaggagatggaa
agctctccagctgctgttggtgagacaaaagaagaagaccctcccaaatccccgaaagag
gagagccctgagctccccacacagacgcctgtggggagccctgaactccccacagagacg
cctgtggatgcgcctgaaacccaggaggagtccgctcctgcagacacggccaaagaggaa
cagggatag
DBGET
integrated database retrieval system
