Cyclopterus lumpus (lumpfish): 117726448
Help
Entry
117726448 CDS
T09199
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117726448 (sox5)
Transcription factors [BR:
clum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117726448 (sox5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
117726448
NCBI-ProteinID:
XP_034382633
Ensembl:
ENSCLMG00005021743
LinkDB
All DBs
Position
23:5221604..5304647
Genome browser
AA seq
803 aa
AA seq
DB search
MLLLTRVTDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGEVTMATSRQRMDDEDSEGL
GGVIHLPLVSYCGKVSPRSPPNRNLDSPPNMEQDSTKGSSLSPYPQHNATSPGKEDGGGG
GGGGGGGGGGGGGGRPCSDGGSAAGALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEA
PSIERLLSKDWKDKLLAMGSGHIGEIKGTADSLAEKERQLMGMIGQLSSLREQLLAAHEE
QKKLAASQMEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIP
VFPPDQRTLAAAAAQQGFLMPSGFNYKPGCSDPYPLQLIPTTMAAAAAAAAATPGLGPLQ
LQQLYAAQLAAMQVSSVPKQHGGSLPPQVNLGTHSPPTNTHSHSEKGRSSPLPNKAKDSE
GAQPLNLSAKPKASESKSPNSPPTSPQVAAAAAAAKLGLAGSGKHSAAPSSIGGPPTRVS
SIDLLSSLSTTAYLSDHEAVTKAFAEARQMKEQLKREQQVLDAKVAAVSNLSLNNGRSDK
DKAALESLSQQLKQQAEDKFSHAMLDFTMSGDSDGSPSVSDSRIFREARGRGTAEPHIKR
PMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKGMTNLEKQPYYEEQARLSKQHLE
KYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRSRRQEMRQYFSVGQQSQLPLSSAGVVYP
GALSMAGMPSPQMPSEHSSMSSSPEPNANHHQNPHMAGLKGDEPRIKQEELRLDDSNGDV
YDDFEYEDEEAEYTSDNENHITQ
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgttgacaagagtgacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagaggtaaccatggcaaccagcagacagcgaatggatgatgaggatagcgagggactg
ggcggcgtcatccacctccccctggtctcctattgcggcaaggtgtcccctcgctcaccc
cccaaccgcaacttggacagcccccccaacatggagcaggacagcacaaaggggagctct
ctgagcccttacccccagcacaatgctacctcgccgggcaaagaggatggcggcggtggc
ggtggtggtggtggtggtggtggtggcggcggcggtggagggcggccctgcagcgacggc
ggctcagccgcgggtgccctggggacgcccgagagacgcaagggcagcctggcagacgtg
gtggacacactgaaacagcgcaagatggaggagctgatcaagaacgagccagaagaggcc
cccagcattgagaggctgttgtcaaaggactggaaggataaacttttggccatgggctca
gggcacatcggagaaattaaaggtaccgcagacagcttggcggagaaagagcgccaactc
atgggcatgatcggccagttgagcagcctgagggagcagctcctggcggcccacgaggag
cagaagaagctggccgcctcgcagatggagaagcagaggcagcagatggagctggccaag
cagcagcaggaccagattgcccggcaacagcagcagcttctgcagcagcaacacaaaatc
aacctcctgcagcaacagatccagcaggtccaaggccaactccctccgctgatgatcccc
gtctttcctccagaccagcggactctggcagcggcggcggcccagcaaggcttcctcatg
ccctctggcttcaactacaagcctggctgcagtgacccctaccctcttcagctcatcccc
acaacaatggctgccgccgccgccgccgctgctgccacgccaggcctgggacccctccag
ctccagcagttgtacgcagctcagctggcggccatgcaggtttcctctgtgcccaagcag
cacggaggcagcctgccaccgcaagtcaacctgggcacacactccccacccaccaacaca
cactcccatagcgagaagggccgcagctccccgctgccaaacaaggccaaggacagtgag
ggtgctcagccactgaacctgtcggccaagcctaaggcatccgagagcaagtcacccaac
tcccccccaacttccccacaggtcgctgctgctgccgctgctgccaagctgggccttgcc
ggctccgggaagcacagcgctgccccctccagcatcggaggtcctcccaccagagtcagc
tccatagacttgttgtcctccctgtccacgaccgcctacctgagcgaccacgaggccgtg
accaaggccttcgccgaggcccggcagatgaaggagcagctgaagagagagcagcaggtc
ctggacgccaaggttgccgccgtcagcaacctgagcctcaacaatggacgctcggacaag
gacaaggctgccttggagagtctgagtcaacagctgaaacagcaggcagaggacaagttc
agccacgccatgctggacttcaccatgagcggagactctgacggctcccccagcgtgtca
gactccagaatatttcgggaggcccggggtcgtggcaccgccgagccgcacatcaagcgg
ccgatgaacgccttcatggtttgggccaaggacgagaggagaaagatcctccaggccttc
cccgacatgcacaactccaacatcagcaagatccttggctcccgctggaaaggcatgacc
aacctggagaagcagccgtactatgaggagcaggctcgcctcagcaagcagcatctggag
aaatacccagactacaagtacaagccgcggcccaaacgcacctgcctggtggacggcaag
aagctgcgcatcggcgagtacaaagccatcatgaggtcccgcaggcaggaaatgagacaa
tacttcagtgtggggcagcagagccagttgcccttgtcctccgcaggcgtggtttaccca
ggtgccctctccatggccggaatgccctcaccccaaatgccctcagagcactcaagcatg
tccagcagccccgagcccaacgccaaccaccaccagaacccccacatggctggcctgaag
ggggacgagccacgaattaagcaggaggagctgcggctggacgacagcaacggcgacgtg
tacgacgacttcgaatacgaggacgaagaagcagagtacaccagcgacaacgagaaccat
atcacccaatag
DBGET
integrated database retrieval system
