Cyclopterus lumpus (lumpfish): 117727027
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Entry
117727027 CDS
T09199
Symbol
taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117727027 (taf1a)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
117727027 (taf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
YozE_SAM_like
DUF1641
Motif
Other DBs
NCBI-GeneID:
117727027
NCBI-ProteinID:
XP_034382875
Ensembl:
ENSCLMG00005017893
UniProt:
A0A8C3A6Q6
LinkDB
All DBs
Position
24:complement(9972004..9986257)
Genome browser
AA seq
425 aa
AA seq
DB search
MEDLQRELGPLEDLEDDNNSSDDNSSKTSNLPVVDPMCAETSRETGFHRSTRACMEMIRE
ALLHHRWQEAAEYMACYPQMLENPTNGTSQQYKELIWRFSAEILHHHPKSKMEDYNNIYE
RMKHSGVKHFLMISLEHSFHLLHHGHIEDAKHQLSVAESWRYGKESAAQYQRIKLIHAYR
SLLDYLIWCDKKFTYSNNTEYLDCGENQDMQNYFRQASVNLKEILKQPGVWDPFILGYVE
MLEFYEDHEEALKVLTDYAYDTNFPPNPNAHVYLYQYLKRRNASERKLMKVLKSLRLLVP
SHELMPQYSTLLLQSEKNPNIQKALGVVLDLLDFACWRSNLDVWKLLKAIIQKLQLQEDW
RDSVAEKMSARKDWWPALHFTRFHASKDSQENPELMGVKAPLTKVLCPDLILKYTAWQVT
SGEGT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggaggacttgcaaagagagctcgggccccttgaagacttagaggatgacaacaattcc
tcagacgacaactcttcaaaaacatcaaatctccctgtggttgatccaatgtgtgcagag
acgtcgagggaaactgggtttcaccggagtaccagagcctgtatggagatgatcagagaa
gccctgctgcatcatagatggcaagaggcagcagaatatatggcatgttacccacaaatg
ttagagaacccaaccaatggcacaagtcagcagtataaggagctcatttggagattcagc
gctgagatccttcaccatcaccccaagtcaaagatggaggactacaacaacatctatgaa
cggatgaaacactcaggagttaaacatttcctgatgatctctctggaacattcattccac
ctgctgcatcatggtcacatcgaggatgcaaagcatcagctgtctgtcgctgaaagttgg
aggtacgggaaggagtcagcagctcagtatcagaggattaaactgatccacgcctacagg
agtttactggattatctgatctggtgtgacaagaagtttacctactccaacaacactgag
tatctcgactgtggtgaaaaccaagacatgcaaaactacttcagacaggcctctgtgaat
ctaaaggagattttgaaacaacctggcgtctgggatcccttcatactgggttacgttgag
atgctggagttctatgaggatcatgaggaagctttaaaagtcctgactgattacgcatat
gacacaaattttccacccaatcccaacgctcatgtctatctgtaccagtacttaaagcgg
cgaaatgcttcagaaagaaaactgatgaaagtattgaagagtctccgtttgttagtccca
agccatgagctgatgccgcagtacagcactctgctgctccagtcagagaaaaaccctaac
atccagaaagctttaggagtcgttctggacttgctggacttcgcctgctggaggagcaac
ctggatgtgtggaagcttttaaaggccattattcaaaaactacagttacaagaagactgg
agggactccgttgctgaaaaaatgtctgcaagaaaagactggtggcctgcgcttcacttc
acaagattccatgccagcaaagactcccaggagaatccagagctcatgggagtgaaggca
cccctgacaaaagtcctttgcccggacctaatactcaaatacacagcctggcaggtaacc
agtggagagggaacgtga
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