KEGG   Cyclopterus lumpus (lumpfish): 117727235
Entry
117727235         CDS       T09199                                 
Symbol
mex3b
Name
(RefSeq) RNA-binding protein MEX3B
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
clum  Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:clum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117727235 (mex3b)
   04121 Ubiquitin system [BR:clum04121]
    117727235 (mex3b)
Enzymes [BR:clum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117727235 (mex3b)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117727235 (mex3b)
Ubiquitin system [BR:clum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117727235 (mex3b)
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP zf-C3HC4 RING_XB3-XBAT31 KH_2 zf-C3HC4_2 KH_DEAH11_2nd Prok-RING_4 zf-RING_UBOX zf-RING_5
Other DBs
NCBI-GeneID: 117727235
NCBI-ProteinID: XP_034383293
Ensembl: ENSCLMG00005000700
UniProt: A0A8C2WBZ1
LinkDB
Position
3:1896943..1900467
AA seq 535 aa
MPSSLFADSSVQGDARDDQRALQIALDQLSLLGLDNDENPLYDNQEPRKKSVNMTECVPV
PSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAE
HFSMIRASRNKNTSLNGSGTPAPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQ
THTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHITMRTGGLIELQDENDFHANGTDVG
LDLHGHAILWSKPSAGITPTSVRKPFSSYRNDSSSSLGSASTDSYFGNNSSRMADYSPPS
PALSYTTTNGNNNNNINVNTNGNGFVYGSEGISPDCTDLTFDSSPGFDASTPPSLLWSQY
DSGMTPSSTGCSSPTSTSAIFPTNTSTNANGVVISQRRVNGCTAQPRLSPPLHSLTGGPS
EHPLARRVRSDPGGGSLSFPTYSSTMASLPGPHLPGVQCDSSTSSSSSSSSSSSTTSRKD
SRDCSVCFESEVIAALVPCGHNLFCMECANRICERSEPQCPVCHTSVTQAIRIFS
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgcccagctcgctctttgcggacagcagcgtccagggagacgcgcgggacgaccagaga
gccctgcagatcgctctggaccagctctccctgctcggcttggacaacgacgagaacccc
ctgtacgacaaccaggagccccggaaaaagagcgtcaacatgacggaatgcgtcccggtt
cccagctccgagcatgtggctgagattgtgggcagacagggttgcaagatcaaagcactg
cgagcaaagaccaacacctacatcaagaccccggttcgaggcgaggagcctgtgtttgtg
gtgacgggcaggagagaggacgtggccatggccaggagggagatcatctctgctgccgag
cacttctccatgatccgagcctccaggaacaaaaacaccagcctgaatgggagcggcacc
cctgcccccggaccccctaacctgcctggacagaccaccatccaggtgcgggtgccttac
cgtgtggtggggctggttgtaggccccaagggtgccaccattaagcgcatccagcagcag
acccacacctacatcgtgacacccagcagagacaaggagccagtgttcgaggtgacaggg
atgccggagaacgtggaccgagcacgggaagagatcgaagcccacatcaccatgaggaca
gggggtcttattgagcttcaggatgaaaatgactttcacgccaacgggactgatgtgggt
ttggacctacacggacacgccatcctgtggtccaagcccagcgccgggataacccccacc
tcagtacggaaacccttctccagctaccgcaacgactcgtcttcctccctgggcagtgcc
tccacagattcctactttggtaacaacagctcgcgtatggccgactacagcccccccagc
cctgcactcagctacaccaccaccaacggcaacaataataacaacatcaacgtcaacacc
aacggcaatgggttcgtttacggaagtgaggggatctcgcctgactgcactgatctgact
tttgactcctcgccgggattcgacgcgtcaaccccgccgagcctcctgtggtcccagtac
gatagtggcatgaccccctcctccaccggatgcagctcccccacatccacctctgctata
ttccccaccaacacctccaccaatgccaatggagtagtgataagtcagagaagggttaat
ggttgcaccgcgcagcccagactgtcgcctccccttcacagcctcaccggaggtcccagt
gagcacccgttagcccggagggtgcgcagtgacccaggcggaggctccctcagtttccct
acgtattcaagcactatggcctccctgccgggccctcacctccccggggttcagtgcgac
tcctccacctcgtcgtcatcctcttcctcctcctcctcctccaccaccagccgaaaagac
agccgtgactgttcggtgtgcttcgagagtgaagtcatcgcggccctggtcccctgtggg
cacaacctcttctgtatggaatgtgctaatcgtatctgtgagaggagcgaaccccaatgc
cctgtctgccataccagcgtcactcaggctatacgtatattttcataa

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