Cyclopterus lumpus (lumpfish): 117727235
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Entry
117727235 CDS
T09199
Symbol
mex3b
Name
(RefSeq) RNA-binding protein MEX3B
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117727235 (mex3b)
04121 Ubiquitin system [BR:
clum04121
]
117727235 (mex3b)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117727235 (mex3b)
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117727235 (mex3b)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117727235 (mex3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
zf-C3HC4
RING_XB3-XBAT31
KH_2
zf-C3HC4_2
KH_DEAH11_2nd
Prok-RING_4
zf-RING_UBOX
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
117727235
NCBI-ProteinID:
XP_034383293
Ensembl:
ENSCLMG00005000700
UniProt:
A0A8C2WBZ1
LinkDB
All DBs
Position
3:1896943..1900467
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AA seq
535 aa
AA seq
DB search
MPSSLFADSSVQGDARDDQRALQIALDQLSLLGLDNDENPLYDNQEPRKKSVNMTECVPV
PSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAE
HFSMIRASRNKNTSLNGSGTPAPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQ
THTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHITMRTGGLIELQDENDFHANGTDVG
LDLHGHAILWSKPSAGITPTSVRKPFSSYRNDSSSSLGSASTDSYFGNNSSRMADYSPPS
PALSYTTTNGNNNNNINVNTNGNGFVYGSEGISPDCTDLTFDSSPGFDASTPPSLLWSQY
DSGMTPSSTGCSSPTSTSAIFPTNTSTNANGVVISQRRVNGCTAQPRLSPPLHSLTGGPS
EHPLARRVRSDPGGGSLSFPTYSSTMASLPGPHLPGVQCDSSTSSSSSSSSSSSTTSRKD
SRDCSVCFESEVIAALVPCGHNLFCMECANRICERSEPQCPVCHTSVTQAIRIFS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctcgctctttgcggacagcagcgtccagggagacgcgcgggacgaccagaga
gccctgcagatcgctctggaccagctctccctgctcggcttggacaacgacgagaacccc
ctgtacgacaaccaggagccccggaaaaagagcgtcaacatgacggaatgcgtcccggtt
cccagctccgagcatgtggctgagattgtgggcagacagggttgcaagatcaaagcactg
cgagcaaagaccaacacctacatcaagaccccggttcgaggcgaggagcctgtgtttgtg
gtgacgggcaggagagaggacgtggccatggccaggagggagatcatctctgctgccgag
cacttctccatgatccgagcctccaggaacaaaaacaccagcctgaatgggagcggcacc
cctgcccccggaccccctaacctgcctggacagaccaccatccaggtgcgggtgccttac
cgtgtggtggggctggttgtaggccccaagggtgccaccattaagcgcatccagcagcag
acccacacctacatcgtgacacccagcagagacaaggagccagtgttcgaggtgacaggg
atgccggagaacgtggaccgagcacgggaagagatcgaagcccacatcaccatgaggaca
gggggtcttattgagcttcaggatgaaaatgactttcacgccaacgggactgatgtgggt
ttggacctacacggacacgccatcctgtggtccaagcccagcgccgggataacccccacc
tcagtacggaaacccttctccagctaccgcaacgactcgtcttcctccctgggcagtgcc
tccacagattcctactttggtaacaacagctcgcgtatggccgactacagcccccccagc
cctgcactcagctacaccaccaccaacggcaacaataataacaacatcaacgtcaacacc
aacggcaatgggttcgtttacggaagtgaggggatctcgcctgactgcactgatctgact
tttgactcctcgccgggattcgacgcgtcaaccccgccgagcctcctgtggtcccagtac
gatagtggcatgaccccctcctccaccggatgcagctcccccacatccacctctgctata
ttccccaccaacacctccaccaatgccaatggagtagtgataagtcagagaagggttaat
ggttgcaccgcgcagcccagactgtcgcctccccttcacagcctcaccggaggtcccagt
gagcacccgttagcccggagggtgcgcagtgacccaggcggaggctccctcagtttccct
acgtattcaagcactatggcctccctgccgggccctcacctccccggggttcagtgcgac
tcctccacctcgtcgtcatcctcttcctcctcctcctcctccaccaccagccgaaaagac
agccgtgactgttcggtgtgcttcgagagtgaagtcatcgcggccctggtcccctgtggg
cacaacctcttctgtatggaatgtgctaatcgtatctgtgagaggagcgaaccccaatgc
cctgtctgccataccagcgtcactcaggctatacgtatattttcataa
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