Cyclopterus lumpus (lumpfish): 117727361
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Entry
117727361 CDS
T09199
Symbol
fdft1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum00100
Steroid biosynthesis
clum01100
Metabolic pathways
Module
clum_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
117727361 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
clum01006
]
117727361 (fdft1)
Enzymes [BR:
clum01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
117727361 (fdft1)
Prenyltransferases [BR:
clum01006
]
Terpene biosynthesis
Squalene/phytoene synthase
117727361 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C1
SQS_PSY
Propeptide_C1
Motif
Other DBs
NCBI-GeneID:
117727361
NCBI-ProteinID:
XP_034383523
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All DBs
Position
24:8078982..8089827
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AA seq
716 aa
AA seq
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MDILKSLGHPEEIFNLFKFKMGGCRTVMPKLDYESMSESLRTCYLYLNQTSRSFAAVIQA
LDGELRHAVCIFYLVLRALDTVEDDMTIPLDKKVPMLNDFHTFLYQKEWCFTESQEKDRQ
VLADFPTISVEFRNLAQEYRDVISDICHRMGVGMAEFLEKKVGSMKEWDLYCHFVAGLVG
VGLSQLFSASQLEDPEVGRDTELANSMGLFLQKTNIIRDYLEDTQVGRAFWPEEAWSQFA
GRLEDLAEPEKLDLALSCLNLLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATL
SSCYNNPMLFQGVVKIRKGQAVTLMMEATSMSAVQTIISQYSQEILQKVSQTDPSRDKTL
HILALIEEKSAVSQSSLPSRTHHLSPMYLSAAMLLAALISVARARPPLTHASPEMVELIN
KANTTWAAGQNFYNIDISYVKGLCGTILNGPKLPEVVHSTEGIKLPASFDARQQWPNCPT
IQQIRDQGSCGSCWAFGAAEAISDRLCIHSSGKISLEISAEDLLSCCDECGMGCFGGYPS
AAWEFWAKKGLVTGGLYGSKVGCRPYSIASCEHHVNGTRPPCQGEEDTPKCEEQCIDGYS
PSYQKDKHFGRRSYSVPSQQEQIMTELYKNGPVEAAFSVYADFLLYKTGVYQHVKGDMLG
GHAIKILGWGEESGTPYWLAANSWNSDWGDKGFFKIKRGNDECGIESEVVTGIPLN
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggacatcctgaagtcactgggccacccggaagagatattcaacctgtttaaatttaaa
atggggggatgcagaaccgtcatgccaaagttggattatgagtccatgagcgagagtctg
cggacctgctatctgtacctgaaccagaccagccggagttttgcagctgtgattcaagcg
ctggacggagagttgagacatgcagtctgtattttctacctggtgctgcgagcgctggac
acagtggaggacgacatgactatccctctggacaagaaggttcccatgctgaatgatttc
cacaccttcctgtaccagaaggagtggtgcttcaccgagagccaggagaaagacagacag
gttctggctgatttccccacgatatcagtggagttcagaaacctcgctcaggaatacaga
gacgtcatctcggatatctgccaccgaatgggagtcggaatggccgaattccttgaaaag
aaagtgggctccatgaaggagtgggacctgtattgccattttgtggcggggctggtcggt
gtcggtctgtctcagctgttctctgcgtcccagctggaagaccccgaggtggggcgcgac
accgagctggccaactccatgggcctgttcctccagaagactaacatcatccgagactac
ctcgaggacacgcaagtgggacgcgccttctggccagaagaggcctggagtcagtttgca
ggtcgtctggaggacttggccgagccggagaagctggacttggctctctcctgtctcaac
ctgctggtcactgatgctctgcgacacgtcccggatgtcatcgcctacctgtcccgcctg
cgcaaccagagcgtcttcaatttctgtgccattccgcaggtgatggcgatagctacactg
tcgtcatgctacaacaaccccatgttgttccagggcgtggtgaagatcaggaagggacag
gctgtcacactcatgatggaagccaccagcatgagcgccgtgcagaccatcatctcccag
tacagccaggagatcttacagaaagtctctcagacggacccgtctcgggacaagaccctg
cacatcctggctctgatcgaagagaagtccgccgtgtcgcagtccagcctcccctccagg
acccaccacctgtcgcccatgtacctgtctgccgccatgctgctcgccgctctcatctcc
gtcgcccgggctcggcctcccctcactcatgcctccccggagatggtcgagctcatcaac
aaggccaacaccacctgggcggccgggcagaacttctacaacatcgatatcagctatgtg
aagggactgtgtgggactatactgaatggacccaagctgccagaagtggttcacagtaca
gagggcataaagcttcccgccagcttcgacgcgcgtcagcagtggcccaactgtcccacc
atccaacagatcagagatcagggatcatgtgggtcctgctgggcctttggggcggcggag
gcgatatccgacaggttatgtatccacagcagtggtaagatctctttggagatctctgct
gaagatctactgtcctgctgtgatgaatgcggcatgggctgtttcggtggttatccctct
gctgcctgggagttctgggcaaagaaagggctggtgacaggaggcctgtatggctccaaa
gtcggctgccgaccctacagcatcgcttcctgtgagcatcacgtgaatgggactcgtcct
ccttgccagggtgaagaggacactcctaagtgtgaagagcagtgcattgatggatactcg
ccgtcctatcagaaggacaaacactttggtagacgctcatacagcgtcccgtcccagcag
gagcagatcatgaccgagctgtacaagaacgggcccgtggaggccgcgttctctgtatat
gcagattttctgctgtacaagactggtgtgtaccagcatgtgaaaggtgacatgctggga
ggtcatgccatcaagatcctcggttggggggaggagagtgggacgccctactggttggct
gcaaactcctggaacagtgactggggagataaaggtttcttcaagatcaagcgtggaaat
gatgagtgtggtattgagtcagaggtggttacaggaatcccactcaactag
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