Cyclopterus lumpus (lumpfish): 117727470
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Entry
117727470 CDS
T09199
Symbol
srsf5b
Name
(RefSeq) serine and arginine rich splicing factor 5b
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03040
Spliceosome
clum05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117727470 (srsf5b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117727470 (srsf5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117727470 (srsf5b)
Spliceosome [BR:
clum03041
]
Common components
Common spliceosomal components
SR proteins
117727470 (srsf5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_5
SET_assoc
Motif
Other DBs
NCBI-GeneID:
117727470
NCBI-ProteinID:
XP_034383694
Ensembl:
ENSCLMG00005022666
UniProt:
A0A8C3AZS9
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All DBs
Position
24:complement(15040935..15046567)
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AA seq
326 aa
AA seq
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MSGCRIFIGRLSPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGK
ELCNERVTIEHARVRLRGGRGRGGGSGGGGGGSSAGGRFSDRYGRGSQNSRSRNPPPMRT
ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASGSDLKNAMDKLSG
KEINGRKIKLIEAARKRSRSRSRSDSSSRSRSRSRGRSPSRSPRRSRSPAHKPHNRSRSR
SRSRSRSRSRSRSRSRSLSRSPVGGASSPNSKSKDPPKRPSKTSKSGTPPSPPPLQRASV
SRSRSRSRSRSRSRSRSRSRSTDSQR
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggtgtcgcatcttcatcggccgcttgagcccctcggccagagagaaggatgtg
gagcggttcttcaaaggatacggccgcatccgggacatcgacctcaagaggggcttcggc
ttcgtggagtttgatgaccccagagacgctgaagatgctgtttatgagcttgatggcaaa
gagttgtgcaatgaaagggtgactattgagcacgctcgcgtacgtctgcgtggcgggcgc
ggcagaggtggtggtagtggcggaggtggcggcggcagtagtgcaggaggacgtttctct
gatcgttatggccgcggctcccagaacagtcggagccgaaaccctcctccgatgcgcact
gagaaccgactcatcgtagaaaacttgtcctctcgagtgagctggcaggacctgaaagat
ttcatgagacaagctggagaggtgacatttgcagacgcacaccggcccaagctcaacgaa
ggggttgttgagtttgcttctggcagcgatctgaaaaacgccatggacaaactgtctgga
aaggaaatcaatggcaggaaaatcaagctcattgaggcagccaggaagaggtcgagaagt
cgttcccggtctgacagctcctctcgctcacggtcccgttctcgtggtcgctctccatct
cgctcccccagacgttcccgcagccccgcccacaagccccacaaccgctcccgctcccgt
tcccgttctcgctcccgttcccgctctcgttctcgctctcgctctcgctccctcagtagg
tcccctgtcggcggcgcctcctctccaaactccaagtccaaggacccccccaaacggccg
tccaagaccagcaagtctggcaccccgccctctcctccgcccctccagagagcctccgtc
tcccgttctcgttctcgttcccgctcccgttctcgctctcgttctcgctctcgttctcgc
tctactgacagccagcgctaa
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integrated database retrieval system
