Cyclopterus lumpus (lumpfish): 117727566
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Entry
117727566 CDS
T09199
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
clum04990
]
117727566 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
clum04990
]
Other domain-containing proteins
Patched domain-containing proteins
117727566 (ptchd4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
DUF7041
Motif
Other DBs
NCBI-GeneID:
117727566
NCBI-ProteinID:
XP_034383832
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All DBs
Position
24:complement(21382247..21458970)
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AA seq
921 aa
AA seq
DB search
MCFIGGDGTSASATLWRMLRQVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFTPETDLEVLVAPTHSLAKIERSLANSLFPIDQSKHKLYSDLHTPGRYGRLILLARS
GGNILELADQVLRVHKQVLELYVNYKGFNYTFAHLCVLRHRDKRCLLDDIVTIFEDIGQA
VLSNSTFHKVPVSYPNTTLKDGRVSFIGHQLGGVSFSANSRDQQVKYARAVQITYYLRNH
GPVVQDAIAERWENEFCALVSRLSTAEVPHATDQLHVQSLTSFSLWRDFHQTGVLAKGEV
LVSLVLVLLAATFSSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGI
PFFAMGHGTKGVFELLAGWRRTRENLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP
FTNIESVKIFCQSMCVAILVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDR
QPTWFKTMMSDGHDLSTHHDSVPYQNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASF
SFMGCLQISDGSNIVNLLASNSPSVSYALTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEH
LKTLSHGFNKISWMDNFFHYLRVVNVSASTKGDFITILKGSFLRSPEYQHFTEDIIFSKN
RETDEYDIIASRIYLVARTTEKKREEVVELLEKLRPLMLINSIKFIAFNPTFVFMDRYSS
SVISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVGMDSISI
LCLIYTLNFAMDHCVPHLYTFVLANEHTRTQCIKLALEEHGAAILQNASCFVIGIMPLVF
VPSNLTYTLFKSSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKERERERERE
REREEIECIEVRENPDHVTNV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcatcggaggagacgggacatctgcgagcgcgactctgtggaggatgctgcgg
caggtgatccacagagggctcaaggcttcgttctactggctgggcttattcgttagcagg
caccccgtgttcttcctcaccgtccccgcggtcctcaccatcatcttcgggtccaccgtg
ctcagccgattcacgccggagacggacctggaggtgctggtcgcgccgacccacagcctc
gccaagatcgagcgcagcctcgccaacagcctgttccccatcgaccagtcgaagcacaag
ctgtactcggacctgcacacgccgggcagatacggcaggctcatcctgctcgcccggtcc
ggagggaacatcctggagctcgccgaccaggtcctgcgggtccacaagcaggtgctggaa
ctgtacgtcaattacaaagggttcaactacacgttcgcgcacctctgcgtgctgaggcac
cgggacaagcgctgcctcctggacgacatcgtcaccatctttgaggacatcgggcaggcg
gtgctctccaacagcaccttccataaggtgcccgtgagctacccgaacacgacgctgaag
gatggccgtgtgtccttcatcggccaccaactgggaggcgtgtccttctcggccaacagc
cgcgaccagcaggtcaagtacgcccgcgccgtccagatcacctactacctccgcaaccac
ggacccgtggtgcaggatgccatcgccgagcgctgggagaatgagttctgcgcgctggtc
agccggctgtcaacagccgaggtgccccacgcaaccgaccagctccacgtccagtcgctc
acctccttcagcctgtggcgggacttccaccagacgggcgtgttggccaagggggaggtg
ctggtcagcctggtgctggtgctcctggccgccaccttctccagctccatgcgggactgc
ctgagggggaagccgttcctgggcctgctgggcgtgctgaccatatgcatcgccaacgtg
acggcggcggggatcttctttatatcggacgggaagttcaactccacactcctggggatc
ccattctttgccatgggccatggaaccaaaggggtgtttgagctgctggcaggttggagg
agaacgagggaaaacctccccttcaaggagcgcgtggcggacgcttttgctgatgtgatg
gtctgctacaccatgaccagctccctctacatcatcacctttggcatgggagctagccct
ttcaccaacatcgagtcggtgaaaatcttctgccagagcatgtgcgttgccatcctggtc
aactacttctacgttttctctttctacggctcctgcctggtgtttgccggacagctggag
cagaaccgttaccacagtgttttctgttgtaaaatcccctcggtggagtacctggaccgc
cagcccacatggttcaaaaccatgatgagtgatggccatgacttgtccacgcaccacgac
agcgtcccctaccagaatcacttcatccagcacttcctgcgtgagcactacacagaatgg
attactaacacctatgtcaaaccctttgtggtcattctgtatctcatctacgcctctttc
tcattcatgggatgtttacagatcagtgatggatcaaatatagtgaacctgctggctagt
aactccccaagtgtttcgtatgctctgacgcagcagaaatacttcagtaactacagtccc
gtcattgggttctacatttacgagcccatcgagtactggaactccacggtgcaggagcat
ctgaagaccctgagtcatggcttcaacaagatctcttggatggacaactttttccactac
ctgcgtgtggtgaacgtgagcgcgtcaacaaagggcgacttcatcaccatcctcaagggc
tccttccttcgcagcccggagtaccagcacttcactgaggacatcatattctccaagaac
cgcgagactgatgagtatgacattatcgcctcgcggatatacctggtggcacgaacgacg
gagaagaagcgcgaggaggtggtggagcttctggaaaagctacgtcccttaatgctgatc
aacagcatcaagttcatcgccttcaatcccacgtttgtgttcatggaccgctacagctcc
tctgtcatctcgcccatcctgacctcagggttcagcgtactcacaatcctcatcctcact
ttcttcctggtcatcaacccgttggggaacttctggctcatcctcacggtaacctccgtg
gagctgggcgtcttgggcttgatgaccctctggaacgttggcatggacagcatctcaatc
ctgtgccttatttataccctcaacttcgccatggatcactgtgtaccacacctgtacact
tttgtgctggccaacgagcacactcgtacgcaatgcattaagttagcactggaggagcac
ggcgctgccatcctgcagaacgcatcctgctttgtgatcgggatcatgcccctggtgttt
gtgccttccaatctgacctacacactgttcaagtcctccctcctcacggcgggctgcact
gtgctgcactgctttgtcatcctgcccgtcttcctgaccttcttcccaccgtccaaaaag
agacacaagaaaaagaaacgggccaagcgcaaagagcgtgagagggagcgtgagagggaa
agagaaagggaggagatagagtgcattgaagtcagggagaatcctgatcatgtgacaaac
gtctga
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