Cyclopterus lumpus (lumpfish): 117727647
Help
Entry
117727647 CDS
T09199
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117727647 (ddx1)
03016 Transfer RNA biogenesis [BR:
clum03016
]
117727647 (ddx1)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117727647 (ddx1)
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117727647 (ddx1)
Transfer RNA biogenesis [BR:
clum03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117727647 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
117727647
NCBI-ProteinID:
XP_034383946
Ensembl:
ENSCLMG00005012911
UniProt:
A0A8C3G1B8
LinkDB
All DBs
Position
24:complement(6501828..6508053)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELGWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQVVYETLKDQQEGKRGRPSVKTGGAIFNNWQMNPYDRSTAFAIGPDGLCCQSREFKEWH
GCRTTKGVTKGKYYYEVACHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDVDKGQISFSKNGNDLGVAFEIPQPVQSQPFFASCVLKNAELKF
NFGGEDFKNAPKSGFIALNQAPEGHTVKSSQAGSAKVSQAKASSNAPKALILEPSKELAE
QTLNNVKQCGKYVDNPKLRNLLVIGGVPAKDQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLGKNHVRTDEVHAKDNTRAGAN
SAEMWSEAIKLLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQL
SCVCLHGDRKPNERKTNLERFKKKEVKLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKDDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKALGGGNYKGHVDVLAPTVQELAILER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttcggaaatgggggttatgcctgaaatcgcgcaggctgtggaagagctg
ggctggctgcttcctactgacatccaggcagagtccattccccttattcttggtggagga
gatgtacttatggcagcagaaactgggagcggtaaaacaggggccttcagtatcccagtg
atccaggtcgtgtatgaaaccctgaaggatcagcaggagggcaagaggggcagaccctct
gtcaagactggaggagcgattttcaacaattggcagatgaatccttatgaccgcagtaca
gcctttgcgattggtccagatggcctgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgcactacaaaaggggtcaccaaagggaagtactactatgaggtggcctgccat
gatcagggattgtgtcgcattggctggtccaccagtcaggcagccctggacttgggaact
gataagtatggttttggttttggtgggacaggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacacgattggatgctaccttgacgtagacaag
ggacagatttccttctctaaaaatggcaatgacctgggtgtggcttttgagatccctcaa
cctgtgcagagtcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aacttcggaggagaagactttaaaaatgcccctaagagtgggttcattgccttgaaccag
gcaccagagggccacacggtcaaatcttctcaagcaggcagtgccaaagtgagtcaggcg
aaagcatcatccaacgcacccaaagccctgatcctggagccatcgaaagaattggcagaa
caaaccctcaacaatgtcaagcagtgtgggaaatatgtggataaccccaaactcaggaac
ctgctggtgattggtggtgtgcctgccaaagatcagctggctgctctggaacaggggatt
gacattgtggtgggaacaccaggaagactggacgacctcatatctactgggaagctcagt
ctgtcccaagtccgctttctagtcctggatgagtgtgacggcttactttccgcaggctac
acagacttcatcaacaggatccataaccaaatccctcaggtcacttctgacggcaaaaga
ctgcaggtgattgtttgctcagccacgctgcattcgtttgacgtgaagaagctgtccgag
cgtatcatgcactttcccacctgggtggacctgaagggggaggactccgtccccgagagt
gtccaccacgtggtagtgccagtaaatcctaagaacgatcgcctgtgggagcgcctcggc
aagaaccacgtccggactgatgaagtccatgccaaagataacaccagagcaggagccaat
tctgcagaaatgtggtcagaagccatcaagctgctcaagggcgagtacacggtgagggcc
atcaaagagcacaagatggaccaggccataatcttctgccgcaccaagatcgactgtgac
aacatggaacagtacttcattcagcaaggaggaggtccagacagtaaatcccaccagctc
tcctgtgtctgtctccatggtgatcgtaagccaaacgagaggaaaactaacctggagcgc
ttcaagaaaaaagaagtgaagctcttggtctgcacagacgtagctgccagaggaatcgac
gtccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactacgtc
catcgtattggcagagttggaagagccgagagaatgggactggccatctccttggttgct
atggagaaggagaaggtgtggtaccacgtttgtccgaaccgaggcaggggctgctacaac
acccggctgaaggacgatggaggttgcaccatctggtacaacgagaaagagctcctgtcg
gatattgaggagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtaccc
cttgatgatttcgatggaaaggtcacctatggtcagcgcaaggctttgggaggcggcaac
tacaagggtcacgtggatgttctggccccgacggtccaggagctggcgatcctcgagaga
gaagcccaatcttccttcctccacctgggttacatgccaaaccagcttttcagagccttc
tga
DBGET
integrated database retrieval system
