Cyclopterus lumpus (lumpfish): 117727783
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Entry
117727783 CDS
T09199
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
clum04131
]
117727783 (lingo1b)
Membrane trafficking [BR:
clum04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117727783 (lingo1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_9
LRR_Zer-1
Ig_2
LRR_RPS2
Ig_C17orf99
V-set
LRRNT
LRR_LRWD1
LRR_NXF1-5
Ig_5
Motif
Other DBs
NCBI-GeneID:
117727783
NCBI-ProteinID:
XP_034384150
LinkDB
All DBs
Position
3:complement(26848466..26850340)
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AA seq
624 aa
AA seq
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MSPQVSSRMVLGEAGGHSYLVACWQPILILMLGTVLSGSTTGCPSRCDCNGQERSVACHR
RRLAALPEGIPTETKMLDLSKNRLKTLGNEEFIDYPQLEELQLNENTISSIEPGAFGNLM
NLRTLGLRNNQLKLIQLGVFTGLTNLTQLDISENKIVILLDYMFQELYNLRALEVGDNDL
VFISPRSFHGLSNLESLNIEGCNLPSVPTDALSHLHNLLSLRLRYLNVTVMRDYSFKRLY
RLRVLEISQMPALDTMTGKCLFGLNLTSLSITNCNLTAIPYQAISHLRYLRFLNLSFNPI
HTVEGNKLYNLQKLQAFHLAGGRVADIEPYSFRGLNHLRVLNVSSNSLSTLEESVFHSVG
NLETLALYDNPLACDCRLLWVFRRRWRLNFNRQQPMCASPEVVQGKEFKDFPDILPSDYF
ICQKSKIMDYKVKESHVDEGTTVHFTCQAEGDPIPVIMWLSPKKDYITTKTAGSRLSVSS
EGTLEVRYAQIQDNGTYLCIASNAAGNDTKAAHLFVHSYSPNWPHQPNKTFAFISNQPSD
EGANVTRASVPFPFDVKTLIIATTMGFISFLGVVLFCLVILFLWSRAKHNVKSSIEVEYV
PPRKEEPEEASPTEAPVQFNMKIM
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacaggtaagcagtaggatggtgttgggggaggcgggggggcacagctacttg
gtggcatgctggcagcccatcctgatcctgatgctgggcaccgtcctgtccggatccacc
accggttgcccctcgcggtgcgactgcaacggtcaggagcgctcggtcgcgtgccaccga
cggagactggcggcgctccccgagggcatacccacggaaacgaagatgctggacctgagc
aagaaccgcctgaagactctggggaacgaggagttcatcgattaccctcagctggaggag
ctgcagctcaacgagaacaccatttcgtccatcgagcccggggctttcggcaacctcatg
aaccttcgaactctaggtttgcgcaacaaccagctcaagctcattcagctgggggtgttc
acaggcctgaccaacctcacccagctggatataagcgagaacaaaattgtcattctgctc
gactacatgttccaggagctgtacaacctgagggcgctggaggtgggcgacaacgacctc
gtattcatctcaccccgatcatttcacggcctcagcaaccttgaaagcctcaacattgag
ggatgcaatctgccctcggtgcccacggatgccctcagccatctgcataacctgctgtca
cttcgattgcgctatctcaacgtcaccgtcatgagggattactcctttaagaggctgtac
cggctcagagtgctggagatttcccaaatgcctgcgctggataccatgaccggaaaatgc
ttgtttgggctcaacctcacatcgttgtccatcacaaactgcaatcttactgccatcccc
taccaagccatcagtcacctgagatatctccgctttctgaatctatcgttcaatcccatt
cacaccgtggaagggaacaaattgtacaatctacagaagctccaagcttttcatttggcc
ggtgggagggtggctgacattgagccctactctttccgaggactgaaccacctccgtgta
ctcaatgtatccagcaatagcctgagcaccctggaggagtctgtcttccactcagtgggg
aacctggagacactggcgttgtacgacaacccgttggcctgcgactgtcgcttgctctgg
gtcttccgccggcggtggaggctcaactttaacagacagcagcccatgtgcgcttcgccc
gaggttgttcaaggaaaagagttcaaggacttcccagacattctcccttccgactatttc
atctgccagaaatcaaagatcatggattataaggtcaaagagagccatgtggatgaaggg
actaccgttcatttcacttgccaagctgagggtgatccgatccctgtgataatgtggctt
tcccctaagaaggactacatcacgaccaaaaccgcggggtcaagactttctgtgtctagc
gagggcacattggaggtccgttacgcccagatccaagacaacggcacctacttgtgcatt
gcaagcaatgcagcgggcaacgacaccaaagctgctcacctttttgtgcatagctactcc
cccaattggccccaccagccaaacaagacatttgccttcatctccaaccagcccagcgac
gaaggtgccaatgtgacccgggcctcggttccatttccattcgacgtgaagaccctcatc
atcgcaaccaccatgggatttatctctttcctcggagtcgtcctcttctgtcttgtaata
ttgttcctctggagtcgagcgaaacacaacgtaaagtcaagtatagaggttgaatatgtg
ccgccacgtaaagaggagccagaggaggccagtccaactgaggcacccgtacaattcaac
atgaaaatcatgtga
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