Cyclopterus lumpus (lumpfish): 117727996
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Entry
117727996 CDS
T09199
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04137
Mitophagy - animal
clum04140
Autophagy - animal
clum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117727996 (hif1al)
04137 Mitophagy - animal
117727996 (hif1al)
04148 Efferocytosis
117727996 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
clum03000
]
117727996 (hif1al)
Transcription factors [BR:
clum03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117727996 (hif1al)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1
PAS
PAS_9
PAS_4
CENP-B_dimeris
DNA_pol_phi
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
117727996
NCBI-ProteinID:
XP_034384492
Ensembl:
ENSCLMG00005004934
UniProt:
A0A8C2YZW5
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All DBs
Position
25:2373661..2387815
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AA seq
702 aa
AA seq
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MEEKEEAVVVKRGSSEQRKLRSRDAARCRRSQETEVFYDLASTLPLPRRVCTHLDKSAIM
RVALSFLRMHHLLLRPGENQSVKSEEEVEKVEKVEKVEEEEEEEEEEEEEEEEEEDPMDS
FYPQALAGFIMVMTEEGDMIYLTENVSTHIGIPQLELLGQSIYDFVHPCDQEELRDLLIP
RPGSRKKLLAERPSERNFFLRMKSTLTSRGRTVNIKSATWKVLHCTGHIRQVGGGSASPP
VGGAMTLLCEPIPHPSSVEFPLDTRTFLTRHSMDLHFTHCEGRVTELVGYKPEDLIGRSA
YEFHHALDSDHVKKSMHTLLSKGQVSTRHYRFLANSGGFVWAETQATVLYSSRTSQPEAV
VCLNYILSAVEEPDLVFSVEQTRCGRPPEAAEPRAPQLAAKDCGTSDISNSDPGGERLVG
SGPTEDAGLNPSSAAELFFKPPEELLQLAPEAGNAIIPLTGDFVELSFVNLPSPDRPQEL
CSPQLQQLLSPISSLITPPLSLSSSSSSSPASSPASPPDDDSSPCEEEVTDPSEVERFFA
VWPEDSEKKEEVLEMEVMDLDMLAPYISMDDDFQLTILNSLPEEADRPLCSSSEPSAVSR
KRAHNPDEETLSELLNQDKRQKQDPSSIEEELLLGHRLLSCLEETDQSDLFMDLGAAGRS
QLLTDRDPVLGGTQGLCDTASLMRDIFTARPPDLSPPPTAMT
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaggaggaagccgtcgtggtcaaacgcggcagttcggagcagaggaagctg
cgttctcgtgacgcggcccgatgtaggcggagtcaggagacggaggtgttctatgacctg
gccagcactctgccgctcccccgtcgagtctgcacccacctggacaagtccgccatcatg
agagtcgccctcagcttcctgcggatgcaccacctcctcctccgacccggtgagaatcag
agtgtgaagtccgaagaggaggtggagaaggtggagaaggtggagaaggtggaggaggag
gaggaggaggaggaggaggaggaggaagaagaagaagaagaagaagatccaatggattct
ttctatcctcaggcgctggccggcttcatcatggtgatgactgaggagggagacatgatc
tacctgacggaaaacgtcagcacccacatcggcatcccacagctggagctgctgggtcag
agtatctatgacttcgttcacccgtgtgatcaggaggagctcagagacctgctgattcca
cgtccaggttcgcgcaagaagctgctggcagaacggccgagcgagaggaacttcttcctg
cggatgaagagcactctgaccagcagggggcgcaccgtcaacatcaagtctgctacctgg
aaggttctccactgcacgggtcacatccgtcaggtgggcggcggctccgcctcgcctcct
gtgggcggagcaatgactttgctgtgtgagcccatccctcacccgtccagcgtggagttc
cctctggacacgcgcaccttcctcacccgccacagcatggacctgcacttcacacactgc
gagggcagggtgacagagttggtgggatacaaacctgaagatctgattggtcgctcagcc
tacgagtttcatcacgccctcgactctgatcacgtcaaaaagagcatgcacacactgctg
tccaaaggtcaggtgagcaccagacactaccgtttcctggcgaacagcggcggctttgtg
tgggcggagactcaggcgaccgtcctctacagcagcaggacgtcgcagccggaggccgtc
gtctgcctcaactatattctcagtgccgtggaggagccggacctcgtcttctccgtggag
cagacccgctgcggccggccgcctgaagcagccgagccccgggcgccgcagctcgcagcg
aaggattgtgggacttccgacatcagcaactccgacccgggcggtgagcgcctcgtcggc
tccggtccgactgaggacgcaggtttgaatcccagcagtgcggcagagctctttttcaaa
ccgccggaggagctcctccagttggctcccgaggccggaaacgccatcatcccattgacg
ggagatttcgttgagctgtcgttcgtcaatctgccgagtccggaccgccctcaggagttg
tgcagtccacagctgcaacagctcctctcacccatctccagcctcatcactccaccttta
tcattatcatcatcatcatcatcatcaccggcctcatcaccggcctccccacctgatgat
gactcgagcccctgtgaggaggaggtgacggaccccagcgaggtggagcggttcttcgct
gtttggcccgaggacagtgagaagaaagaggaagttctggagatggaggtgatggatctg
gacatgctggctccttacatctccatggacgacgacttccagctgaccatcctcaacagt
ctgccggaggaagccgacagacctctgtgttcttcgtccgagccctctgcagtgagcagg
aagcgggctcataacccagacgaggagacgctgtccgagctactgaatcaggacaagaga
cagaaacaagatccttcctcaatagaagaggaacttcttctcggccacagacttctgagc
tgtctggaggaaaccgaccaatcagatttgttcatggacctgggcgctgcagggcgaagt
cagctgctcacagacagagaccctgttttaggaggcacacagggactctgtgatactgca
tctctgatgagggacatattcacagctcgtccacccgatctgtcgccgcctccaacggcc
atgacttga
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