Cyclopterus lumpus (lumpfish): 117728004
Help
Entry
117728004 CDS
T09199
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04621
NOD-like receptor signaling pathway
clum05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117728004 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117728004 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
clum04054
]
117728004 (nod1)
Pattern recognition receptors [BR:
clum04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117728004 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
NOD2_WH
LRR_4
AAA_16
NPHP3_N
AAA_22
RsgA_GTPase
ABC_tran
ATPase_2
PIF1
Roc
Motif
Other DBs
NCBI-GeneID:
117728004
NCBI-ProteinID:
XP_034384521
Ensembl:
ENSCLMG00005013964
LinkDB
All DBs
Position
25:8014694..8022176
Genome browser
AA seq
940 aa
AA seq
DB search
MGQMEEAKAPCLSILTHHRELLVSRLRSIQCILDNLLACGFVCEEDVEIVQRSATKTDQV
RKILELVQCKGEEACEYFIYIIYKVCDAYIDFQPWLKEINYTPSSDARAMVVVNTDPISR
YCERLRHEMSRDTSFILSYGQREETRLEDLYTDTQMELLNDRNESLGFLESLEQLLGDHA
VFNPQGETIYVMGDAGVGKSILLQKLQNLWSKKELQTDAIFFFKFRCRMLSVFKDTDQIS
LRDLLFKYNCYPDHDPDNEVFDYILRFPEKVLFTFDGYDEIQMHDLMNVPEVVSPEVKAH
PVQLLISLLCGKLLKGSQKVLTARTGTEIQSRVIRKKVALRGFSPAHLKTYIDLHFKEQE
HRALVSVQLDASPHLCGLCSTPLFCWIVLKSFRHLHTMHDSFHLPETCITFTDIFLLLSE
VLLSRAGSPAPSLLKKTTRCVSETFKAGLRPLAAFAKLALQGMERGRFIYSQEEITECGL
AEEDLTMGFLRPVSEYDASGSPATFELLHIILQSFLAAFALVLDEQAAAGSILKFFTECS
RKSEPACRPFGFCICGSSKSNEKTPFETNEHLQFTNLFLCGLLSKANAGLMEHLVSPVLL
KKKRTLLKSYLSTSVKSHLIGLPHYDSEEGRKVHVLPNFLWMLRCIFETGSKDIALMTAK
GITAGFIKLGYCNVFSGDCTALNFVLQHRRKLLGLDMDNNNISDYGVKQLRPSFSKMTVV
RLCVNHLSDSSIEVLAEELCKHKVVEVLGLYNNYITDAGAKLVAQIIEECPKLRVVKIGK
NKITSVGGRHLAGAIQRSASIFDVGMWGNSIGDDGAGAFADALRHHPRLTNLSLSANGIT
SKGGQRLAEALKENSVLRIFWLVQNGLTDDAAPHFAELVQANTGLSHLWLINNQFTVDGM
KHLATALTHNTALKEICVKGNQLSEEEERQFVEEKRLLFH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagatggaagaggccaaggctccgtgccttagcatcctcacccaccacagggag
ctgctggtgtcccggttgaggagcattcagtgcatcctggacaacttgttggcctgtggc
ttcgtctgtgaagaggatgtcgagatcgtacagcgatctgccaccaagacggatcaggtg
cgcaaaatcttggagctagtccagtgcaaaggggaggaggcctgtgaatactttatttac
atcatatataaagtatgtgacgcatacatagacttccagccatggttgaaagagatcaac
tacaccccaagtagtgatgcaagggcaatggtggtggtcaacaccgatcccatcagcaga
tattgtgagaggttgaggcatgagatgagccgggacaccagcttcatcttgtcatacggc
cagcgagaggagacccgcctggaggacctatacactgacacacagatggaactgctgaat
gaccgcaatgaaagtttgggcttcttggagagtctagagcagctcctcggagaccatgcc
gtcttcaatccccaaggtgaaaccatctatgtgatgggagatgccggtgtgggaaaatcc
atcctcctgcagaagctccagaacctctggtccaaaaaggagctacagacggacgccatc
ttcttctttaagttccgctgcaggatgttgagcgtcttcaaggacaccgatcagatctcc
ctcagagaccttttgttcaaatacaactgctacccagatcatgatccagacaatgaggtg
tttgactacatcctgcgcttcccggagaaggttcttttcacatttgatggctatgacgag
attcagatgcatgatctgatgaatgttcctgaggtggtgtcaccagaagtcaaggcacac
cccgtccagctgctcatcagcttgctctgtgggaaactactcaagggctcccagaaggtg
ctgacggcccggacggggaccgagatccagagcagggtgatcagaaagaaggtggctctg
cgggggttctcaccggctcacctgaagacctacattgatcttcacttcaaggagcaggag
caccgagctctggtgtcggttcagctggatgccagcccccacctctgtggcctctgctcc
accccactgttctgctggatcgtgctgaagagctttaggcacctgcacaccatgcacgat
agctttcatctgcctgagacctgcatcaccttcacggacatcttcctgttgctgtctgag
gtgctcctcagccgtgcaggctcacctgcaccgtctctgctgaagaaaaccactcggtgt
gtctccgagaccttcaaagcggggctcaggcctctcgcggcatttgccaaactggccctt
cagggtatggagagaggccgcttcatttacagtcaagaggagatcactgagtgtggactg
gcagaggaggacctgaccatgggctttctcagacctgtcagtgagtatgatgccagcggg
agccctgctacatttgaactcctccatatcatcctccagtctttcttggcggcctttgct
ctagtgttagacgagcaggctgctgccggctccatcctcaagttcttcacggagtgcagc
aggaaaagtgaacccgcctgtcggcctttcggcttctgcatctgtggctcctcaaagtcc
aacgagaagacgccatttgaaactaatgaacacctccagttcactaatctgttcttgtgt
ggcctgctgtccaaggccaacgctggcctgatggagcacctggtgtccccggtgttatta
aagaagaaacggaccttgctgaaatcctacctctccaccagtgtaaagtcacacctcatt
ggcttaccccactacgacagtgaagagggcaggaaagttcacgttttgcccaacttcctg
tggatgctgaggtgcatcttcgagacggggagcaaagacatcgctctgatgacggcaaaa
ggcatcacagccggcttcatcaagctgggttactgcaatgtgttctcaggcgactgcacc
gccctgaactttgtactgcagcaccgtcggaagctcctgggcctcgacatggacaacaac
aacatcagtgactatggggtgaagcagctgaggccctccttcagtaagatgacagtagtg
agattgtgtgtcaatcacctgtctgacagcagcatcgaggttcttgcagaagagctgtgt
aagcacaaagttgtggaggtcttaggactttacaacaattacatcacagatgctggagcc
aagctagttgctcagattattgaggaatgcccaaagctgcgagttgtcaagattgggaaa
aacaagatcacgagtgttggtgggaggcatttggccggcgcaattcagaggagcgcttct
atatttgatgtgggaatgtgggggaacagcatcggcgatgacggagcgggagcatttgcg
gacgctctgaggcaccacccgagacttaccaacctcagtctctcagccaatggcattaca
tcgaaaggtgggcagcgcctggcagaagcactgaaggagaacagcgtcctcaggatattc
tggttggtgcagaatggattgactgacgatgcagcgccacactttgccgagttggtccaa
gcgaacacgggtttaagccacctctggttaatcaacaaccagttcaccgtggatgggatg
aaacacctcgctacggccctaacccacaacacagccctcaaagagatatgtgtgaaagga
aaccagctctctgaggaggaagagaggcagtttgtggaagagaagaggctgctgttccac
tga
DBGET
integrated database retrieval system
