KEGG   Cyclopterus lumpus (lumpfish): 117728043
Entry
117728043         CDS       T09199                                 
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
clum  Cyclopterus lumpus (lumpfish)
Pathway
clum03013  Nucleocytoplasmic transport
clum04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:clum00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    117728043 (seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    117728043 (seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clum03019]
    117728043 (seh1l)
   04131 Membrane trafficking [BR:clum04131]
    117728043 (seh1l)
Messenger RNA biogenesis [BR:clum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     117728043 (seh1l)
Membrane trafficking [BR:clum04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    117728043 (seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WDR55 EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C Caudo_TAP_N
Other DBs
NCBI-GeneID: 117728043
NCBI-ProteinID: XP_034384616
Ensembl: ENSCLMG00005006616
UniProt: A0A8C2X254
LinkDB
Position
25
AA seq 383 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSENGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHQP
MFAVGSDDSNVTYSGKVQIYEYNENTRKYAKAETLMTVTDAVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLVPMRKESASTGPTKLEVQIVAQFDNHNSQVWRVSWNITSTLLASSGDDGC
VRLWKANYMDNWKCTGILKGDGSPLTGSSGQPTAMSTVVGSSVQTSQNALNGMSAGRIGK
RAPFAPPLRQLTSPKTYQHPAYY
NT seq 1152 nt   +upstreamnt  +downstreamnt
atgtttgtcgcgcggagcattgcagcagaccacaaagatctgattcatgacgtgtcgtac
gacttccacggccggagaatggccacgtgctccagcgaccagagtgtgaaggtctgggat
aaaagcgagaatggagagtggcactgcacggccagctggaagacacacagcggatcagtg
tggagagtgacctgggctcatccagaattcgggcaggttctggcctcctgctccttcgac
aggacagctgctgtgtgggaagagattgtaggggagtccaacgacaagcagagaggattg
agccactggatcaagaggaccacgctagtagacagcagaacctcagtgaccgatgtgaag
ttcgccccgaaacacatgggcctgatgttgaccacctgctccgccgacggagtggtgagg
atctacgaggcccccgacgtgatgaacctgagtcagtggtccctgcagcacgagatttcg
tgcaagctcagctgcagctgcatctcttggaatccctcgagctctcgtgcccaccagcca
atgtttgcagtggggagcgacgacagtaacgtgacgtacagcgggaaagtccagatctat
gagtataatgaaaacacgaggaaatatgctaaagccgagactctgatgacggtcaccgac
gcggtccatgacatcgcattcgccccgaacctggggaggtccttccacgtgctcgccatc
gcaacgaaagatgttcgaatctttaagctcgtccccatgagaaaggagagcgcctctacg
ggacctaccaagttggaggtgcagattgtggctcagttcgacaaccacaactcccaggta
tggcgtgtgagctggaacatcaccagcaccctgctggcttcttctggtgatgacggctgt
gtgcgcctctggaaagcaaactacatggacaactggaagtgcacaggcatcctgaagggg
gacggcagcccactcaccggctcctccggtcagcccacagccatgagcaccgttgtgggc
tcctcggtccagacctcccagaacgccctgaacgggatgtcagcaggaaggattggcaag
agagctccctttgcccctcccctgcggcagctgacctctccaaagacataccagcatcct
gcgtattactag

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