Cyclopterus lumpus (lumpfish): 117728163
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Entry
117728163 CDS
T09199
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
clum03009
]
117728163 (dcaf13)
04121 Ubiquitin system [BR:
clum04121
]
117728163 (dcaf13)
Ribosome biogenesis [BR:
clum03009
]
Eukaryotic type
90S particles
Other 90S particles
117728163 (dcaf13)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117728163 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Sof1
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
eIF2A
MIOS_WD40
ANAPC4_WD40
KNTC1_N
NBCH_WD40
Beta-prop_SPT8
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
117728163
NCBI-ProteinID:
XP_034384822
Ensembl:
ENSCLMG00005019071
LinkDB
All DBs
Position
25:complement(8594211..8600624)
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKVLSRNPDDYVRETKLDIQRVPRNYDPTLHPFEVSREYTRALNATKLERVFAKPFLA
SLDGHRDGVNCMAKHTKSLSTLLSGSCDGQVKVWNLTKRECVRTLQAHEGFVRGMVVRSC
GTSFFTVGDDKTIKHWKMEAPGYGEEEEPLNTILGKTVFTGLDHHQKDAVFATCGQQVDI
WDERRSSPIRSFTWGVDSFSAVRFNPVETELLASCASDRSIVLYDMRESAPLKKVIMTMR
SNTLCWNPMEAYYFTCSNEDYNLYTYDMRYLDQPVTVHMDHVSAVLDVDYSPTGKEFVSA
SFDKTIRIFPKDGGHSREVYHTKRMQHVICIKWSADNKYILSGSDEMNIRLWKANAAEKL
GVLAPRERQATNYSQKLKEKFQHHPQIRRIAHHRHLPKSLYHQTKELRVMKEARRKKERN
VRKHSRPGSVPLLSEKEKHVVTVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttaaagtcctctcgaggaacccggatgattacgtccgggagaccaaactagac
attcaacgtgtccccagaaactatgacccgactctgcatcctttcgaggtgagcagagag
tacacccgcgccctgaatgccaccaagctcgagagggtgtttgccaagcctttcttggcc
tctctggacggacacagggatggggtgaactgcatggccaagcacaccaagagcctctcc
accctgctctctggctcctgcgacgggcaggtgaaagtgtggaatctgaccaaacgcgaa
tgcgtccgcaccctccaagcgcatgaaggtttcgtccggggaatggtcgtccgctcttgt
ggaacctccttcttcacggttggtgacgacaaaacaatcaaacattggaaaatggaggca
cccggttatggcgaggaagaggagccactcaacactattctgggcaagacagtcttcacc
ggcctggaccaccaccagaaggatgccgtgttcgcaacatgtggccagcaggtggacatc
tgggacgagaggaggagcagcccaatccgctctttcacttggggcgtagacagcttcagc
gctgtgcgcttcaacccggtggagactgaactacttgcaagctgtgcctctgacagaagt
atagtactgtatgatatgagagaatcagcgccacttaaaaaggttatcatgacaatgaga
agcaacacgttatgttggaaccctatggaagcctattacttcacgtgttcaaatgaggac
tacaacctctacacttatgacatgaggtacctggaccagccagtcacagtacacatggac
cacgtctctgctgtgctggatgttgactattctccaactgggaaggagtttgtatctgcc
agttttgacaaaaccatccgcatcttccccaaggacggtggccacagcagggaagtctac
cacaccaaacgcatgcagcatgtcatctgcataaagtggtcggcagacaacaaatacatc
ctgagcggctccgacgaaatgaatatccgactgtggaaagccaacgcagctgagaaacta
ggagtgctggcccccagagagaggcaggccaccaactatagccagaagctgaaggagaag
ttccagcaccacccgcagatccgacgcatcgctcatcacagacacctacccaagagcctc
taccaccagaccaaggagctgagggttatgaaagaggctcgccgcaagaaggagaggaat
gtccgcaagcacagcaggccgggaagtgttcctctgctgtctgagaaggagaagcacgtt
gtgactgtggtcaaatag
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