Cyclopterus lumpus (lumpfish): 117728178
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Entry
117728178 CDS
T09199
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03015
mRNA surveillance pathway
clum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117728178
09123 Folding, sorting and degradation
03018 RNA degradation
117728178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
clum03019
]
117728178
03041 Spliceosome [BR:
clum03041
]
117728178
Messenger RNA biogenesis [BR:
clum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117728178
mRNA cycle factors
Stress granule specific factors
117728178
Spliceosome [BR:
clum03041
]
Complex C
Other components
Complex C specific factors
117728178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
117728178
NCBI-ProteinID:
XP_034384844
Ensembl:
ENSCLMG00005005905
LinkDB
All DBs
Position
25:complement(7012515..7018436)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLREMFNKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQTFNTIRPTAAPNAQVPRM
MASQRMPTQALGQRPTGASATAAPVRAMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgccgagctacccgatggcttccctctatgtgggagacctgcacccg
gacgtcaccgaggccatgctctacgagaagttcagcccggccgggcccatcctctccatc
agggtgtgcagagacatgatcacgcgccggtccctcggctacgcctatgtcaacttccag
cagccagctgatgctgagcgagccctggacaccatgaacttcgatgtgatcaaaggcagg
cccctccgcatcatgtggtctcaacgggacccttccctgaggaaaagtggcgtgggcaac
atcttcatcaagaacctggacaagtccattgataacaaagccctctacgacaccttctct
gcatttggaaacatcctgtcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaggctgctgagcgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttggacgattcaagtctcgcaaagagagggag
gctgagctcggggcacgcgccagagagtttaccaatgtttacatcaagaactttggggag
gacatggatgacgagaagctaagggagatgtttaataaatatggacctgcccttagcatc
cgggttatgactgatgagagcggcaaatcgaagggatttggctttgtcagcttcgagaga
cacgaggatgcacaaaaggcggtggacgacatgaacggcaaagaacttaatggcagacaa
gtgtatgtgggccgcgcacagaagaaaggcgagcggcagaatgagctcaagcgtaaattt
gagcagatgaaacaagatcgcatgacaagataccagggtgtcaatctgtatgtgaaaaat
ctggatgatggcctcgacgacgagcgcctgcgtaaagaattctctccattcggaaccata
actagcgctaaggtaatgatggaggggggccgcagtaaaggctttggctttgtgtgtttc
tcttccccggaagaggcaacaaaggccgttacagaaatgaacggtcgcattgttgccaca
aagccactgtatgtggccctggcccaacgtaaggaggagcgtcaagcccatctaactaac
cagtacatgcagaggatggcaacagtccgtgctgtgcccaaccctgtcctcaacccatat
cagcctgccccaccctcaggctatttcatggcggctatacctcaggcccagaaccgggct
gcatactactctgccaaccagttggcgcagctccgccccagcccccgttgggccactcaa
ggagtgcgtccgcaacacttccaaaacatgcccaatgccatgcgcccgtcagctcccagg
ccccagaccttcaacaccatccgtcccacggccgcccccaacgcgcaggttccgcgcatg
atggcgtcccagcgcatgcccacccaggccctcggccaacgccctaccggtgcgtcagcc
actgccgctccagtgcgggccatgccccagtacaagtatgccgccggagtgcgcaacccc
cagcagcacatggcgtcgcagccacaggtccctatgcagcagcctgctgtccatgtccaa
ggacaagagcccctgactgcctccatgctggctgccgcccctcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctgatccagaacatgcaccccagcctggctggcaag
atcaccggtatgctgctggagatcgacaactctgaacttctccacatgctcgagtcacct
gagtctctgcgctcaaaggtggatgaggctgttgctgtgctccaagcccaccaggccaag
gaggctgctcagaagtctaccacccctgctggtgttcccagcgtctaa
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