Cyclopterus lumpus (lumpfish): 117728291
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Entry
117728291 CDS
T09199
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03440
Homologous recombination
clum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117728291 (brip1)
03460 Fanconi anemia pathway
117728291 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
clum03400
]
117728291 (brip1)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117728291 (brip1)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117728291 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
117728291 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
117728291
NCBI-ProteinID:
XP_034385020
Ensembl:
ENSCLMG00005011933
LinkDB
All DBs
Position
25:152956..249282
Genome browser
AA seq
1539 aa
AA seq
DB search
MATSPVEYTIGGVKIHFPCKAYPSQLAMMNSIIRGLNSGQHCLLESPTGSGKSLALLCST
LGWQQAQFDKLKDGGSLLEDKSQSDKTCGDDKKSDVSTPCQCVCHGRVSSTTANSQTAAR
PAVVDLTVSPCKELTQPLPPAPRQMPSPEELQPRKQSIASRLSEKFLSSFSPNREKDDDD
DDFQPDKKRIRTAEHKQRKRQRLEQGVIFIDDELENEPSGAQSWSTEPNAQAAGPSSSCC
SPEPCSRCPCASAKDGVKDKDGDGKKKIPKIFFGTRTHKQITQITHELKRTVYSRVPMTI
LSSRAHTCVNVEVAPHFNRNERCKDLLEAKDGRSCRYYHGVQRMRDQRTLQRVHGLHDAW
DIEDFVALGKRIRSCSYYAARELKQEASIIFCPYNYLLDPMIRESMEIDLKGQIVILDEA
HNIEDCARESASYTLEHHSLLMSRDELDGMVNNNIRRSKHESLRDFCYSLINWIQESQSL
MSERGYESACKVWNGKDVLGIFHNMGITADTFNNLKKNLAAVLEKEERGSINGKEEMVQV
PTISSATSIVLKNLFMVLGFIYSSEDNCRVAEDYRIALQKSYAWTNHVPPDMPDAQGFVR
PHHRQRQSARVKTEVLTLSFWCLNPAVAFSDFRKSVHSIVLTSGTLSPMGSFSSELGVKF
SIQLEANHVINKSQVWVGTVGEGPQGRKLRATFQHTETYAFQDEVGALLLHVCQVVAKGV
LCFLPSYKMLDKLRERWTNTGLWKKLEQRKAVITEPRGGGKGDFDELLQKYYDAIAYCED
DRDGALLIAVCRGKVSEGLDFTDDNARAVITIGIPFPNIKDLQVELKMKYNDQHCKSRGL
LPGHRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRYRNNPNKYITGLSKWVRQLVQH
HGTFNDAMESLMAFSQRQQKVGAAPADSQALSSTVSSPNGGPGLPNASDPQTPHSCVKPP
ESQQDTSPSAFHFFSRTQLKAEQREKAERLNPMPSPPAQPPSHQKRTAKAMYNIFNCSPI
STCFKKSICKEKAASQSIQHLETSNHSEHQDKQQISTPQAKTEATCLKRGVGDGSIEIKV
GPAPETTPPSCERELLSKDKDEDEEEEGEGEEDQTVFFTPELFEGEDNVGSPEKEMQTKS
PPRMLLGAESPIALSEERFGSERAPGQGPASAFDGQSSISDGKESTELSQRQQEESIIPK
HEEEGEQVDNQSRQTGSRLRRLSRSRKPAASTQTGGAKSAGKVSLQQVETRSSQRRTDEA
RPDHELKGTKVALNSRPARLVRGSSSRIESVYSVHYLKPRVTESGRSPVCVREHKATPGG
STRTESDDVITKQAGAARYSPTRPAVDGPGSQHTKARAIKVQRSCRQKSRRFNKTSPKRK
ITKGHRPCSLGLYCSLCEKELLPVAHGALRSAVCEFEHLSFLRKDQFSPVTPTRHCQCAA
RQPSILDKSGSLLLVQNLASMKALRTALQPYCEGTAYNAIWNPEEGSVTRFLQCRGCLSQ
SPFLSAAVIAAEIQCPRDMAQDQIWLSPAAVQFCPLTTI
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggctacatccccagtagagtacaccattggcggggtgaagatccacttcccctgcaag
gcgtacccgtcccagctggctatgatgaactccatcatacgaggactgaactctgggcag
cactgtttgctggagagtcccacgggaagtggaaagagcttggctctgctctgctccact
ctgggctggcagcaggctcagtttgataaactcaaagacggaggaagccttttggaggac
aagagccagtcggataaaacctgtggcgacgataagaagtctgatgtctccacgccctgt
cagtgtgtgtgccacggcagagtcagcagtaccaccgcaaacagccaaacagcagccaga
cctgctgttgtggacctcacagtgtcaccctgcaaagagctgacacagccgctgccccca
gctcctcgacagatgccatcacctgaggagttgcagcccaggaaacagtctatagcctct
cgtctgtctgagaagttcctgtcgagcttcagccctaaccgcgagaaggacgacgacgac
gacgactttcagccagacaagaagcgcattcgcactgcggaacacaagcagcgtaaaagg
cagcgtctggagcagggagtgatcttcattgatgatgagctggaaaatgagccttcaggt
gctcagagttggtccacggagccaaacgcccaagcagcaggtccatcctcatcatgctgc
tcccctgaaccctgctcccgctgcccgtgtgcttcagctaaagacggtgtgaaggacaaa
gacggggacggcaaaaagaagattcccaagatcttctttggcactcgcacacataaacag
ataactcagatcacccacgagctgaagcgaacggtttactccagagtgcccatgaccatc
ttatccagtagagctcacacatgtgtcaacgtagaggtggcgcctcacttcaaccgcaat
gaacgctgcaaggatctgctggaggccaaagatggcaggtcatgccgctactaccatggt
gtccagaggatgcgggaccagcgcacactacagcgggtccacggactccatgatgcctgg
gacattgaggactttgtcgcactgggcaagcggatccggtcatgctcctactatgctgcc
cgagaactcaagcaggaagcctccatcatcttctgtccatataactacctgctggaccca
atgatcagagagagtatggagattgacctgaaaggccagatcgtgattctggatgaagcc
cacaacattgaggactgtgcaagggagagtgccagctacactttggagcaccacagtctg
ctgatgtccagggatgagcttgacggcatggtcaacaataacatcagacgatccaaacac
gagtcacttagggacttctgctatagcctgatcaactggatccaggagagccaaagcctg
atgtccgaacggggatatgagagcgcctgtaaagtctggaatggaaaggatgtactgggc
atctttcacaacatgggcatcactgctgacaccttcaacaatctgaagaaaaacctggca
gcagtgttggagaaagaggagcgtggttccatcaatggtaaagaggagatggttcaggtc
ccaaccatcagctcggcaacctccatagtcctgaaaaatctcttcatggtgctgggcttc
atctactcctctgaggacaactgcagggttgctgaagactaccggatagctctgcagaag
agctacgcttggacgaaccatgtcccacctgatatgcctgatgcccagggctttgttcgg
ccacaccacaggcaacgccagagcgcccgagtcaagacagaagtcctcacactcagcttc
tggtgcctgaaccccgctgtggctttctctgacttccgtaagtcggtgcacagcattgtg
ctgacatcaggaactctgtcacccatgggctccttctcctctgaacttggggtgaaattc
tccatccagctggaggccaaccatgttatcaacaagtcccaggtttgggtgggcactgtt
ggtgaaggaccccagggcagaaaactccgtgccaccttccaacatactgaaacgtatgcc
ttccaggacgaggtgggtgcgctgctgctccatgtctgccaggtcgtggccaagggtgtg
ctctgctttttgccttcttacaagatgctggacaagctgcgagagcgatggaccaacact
ggtctctggaagaagctggagcaacggaaagccgtgatcacagagccccgcggtggtggc
aagggggactttgacgaactgctccagaagtactacgacgccatcgcttactgtgaggat
gaccgagatggagcactgctgatcgctgtctgtagggggaaagtgagtgaaggactcgac
ttcactgatgacaatgccagggcagtgatcaccattggtattcccttcccaaacatcaaa
gacctccaagtggaactgaagatgaagtacaatgaccaacactgcaaatccaggggtctt
ctcccaggccatcgctggtacgagattcaggcctacagagctctaaaccaggccctgggg
aggtgtatccgccacaagaatgactggggcgccctaattcttgtggatgaccgttacagg
aataatcccaataagtacatcacaggtctttcaaaatgggtccgccagctcgtccagcat
catggcacctttaatgatgccatggagtctctgatggcattctctcagaggcaacagaag
gtgggggcagctcctgcagacagtcaggctctcagctctactgtctcatctccaaacggg
ggaccgggtctgcccaatgcctcagacccccagacaccccactcgtgtgtcaaaccgccc
gaatcccagcaggacacgagcccctcggccttccacttcttttctcgtacacagttgaaa
gcggagcaaagggaaaaagcagaacggttgaacccgatgcccagtcccccagcacagccc
ccatcgcatcaaaaaagaacggctaaggctatgtacaacattttcaactgcagccccatc
agcacctgcttcaagaagtccatctgtaaagaaaaagcagccagtcagtccatccagcac
ttggaaacatctaatcactcggagcaccaggacaaacagcagatctccactccacaagca
aagactgaagcaacttgtctgaagcgaggggtgggagacgggtccattgaaatcaaagtg
gggcctgctccagagacgacccctcccagctgtgagagggaactgctgtcaaaagacaaa
gatgaagatgaagaggaggagggggagggggaggaggaccaaactgtcttctttactcca
gaacttttcgaaggtgaagacaacgtaggtagcccagagaaagagatgcagaccaagtcg
cctccgaggatgcttttgggggcagagagcccgatcgcgctgtcagaagaacgttttggc
tctgagcgggccccggggcaagggccagcctctgcttttgatggacagagttctatttca
gacggaaaggagagcacagagctgtcacagagacagcaagaagaaagtataataccgaag
cacgaggaggagggggagcaggtggataaccagagcaggcagacaggcagtaggcttcgc
aggttgtccaggtccagaaagccagctgcctctactcaaacaggtggagccaagagtgca
gggaaagtcagtcttcagcaggttgagaccaggagcagccagaggaggactgacgaggcc
aggccagatcatgagttaaaggggaccaaggtggctttgaatagcagaccagccagacta
gtaagaggatccagctcaagaatagagagtgtttattcggtacattatctgaaaccaagg
gtgactgagtcaggaaggtcccctgtgtgtgtgagggaacacaaagccacacctggtggt
tccacgaggactgagagtgacgatgtgattacaaaacaagccggagcagcacgatacagt
cctactcgtccagcagtggatggtccaggatctcaacacaccaaagcaagagctattaaa
gtacagcgatcttgcaggcagaaaagcaggagatttaacaagacctctcccaaaagaaag
ataaccaaaggccaccggccatgctctttgggcctctactgttctctgtgtgagaaggag
ctacttcctgtggcacatggtgcactgcgaagtgctgtttgtgaatttgaacatctgtct
tttctgagaaaagaccaattcagtcccgtaacgccgacccgccactgccagtgtgcagca
cgtcagccatcaattttagacaagtcgggctcactgctgctggtccaaaatcttgcatca
atgaaggccctgaggactgctctgcaaccctactgtgagggcactgcatacaatgccatc
tggaaccccgaggagggctccgttaccaggtttctgcagtgcagaggctgtttgtctcaa
agcccctttctgtctgcggcggtaattgcagcagagatccagtgccctcgagacatggct
caagatcagatctggttgtccccggcagcggtccagttctgccctctcaccactatttaa
DBGET
integrated database retrieval system
