Cyclopterus lumpus (lumpfish): 117728310
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Entry
117728310 CDS
T09199
Symbol
herc3
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC3 isoform X1
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117728310 (herc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117728310 (herc3)
Enzymes [BR:
clum01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117728310 (herc3)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
HECT type E3
117728310 (herc3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
TMEM240
Motif
Other DBs
NCBI-GeneID:
117728310
NCBI-ProteinID:
XP_034385096
Ensembl:
ENSCLMG00005002528
LinkDB
All DBs
Position
1:17988006..18010119
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AA seq
1054 aa
AA seq
DB search
MLCWGNAKDGQLGIGIERNPMFEPRNCHVFTGRGLKEIACGGQHSMFLLHDGSVYTCGSN
SCGQLGHSKPGTFPELVGALDTQTITMVSSGRSHSMAVNEQGQVFAWGAGEGGQLGLGTA
EAAVRIPRLVKRLCEQRISQVMCGNQHCIALSKDGQLFTWGQNTSGQLGLGKGEPSKRFP
HPLKSLSGIPLAQITAGGDHSFALSLSGAVFGWGKNKAGQLGLNDKQDRAVPCHIKFLRS
QKVCYISCGNEHTAALTKDGGLFTFGEGSWGQLGHGSTNNELLPRRVLELMGTEVSQITC
GRHHTLAFVPSSDVVYAFGCNSLGQLGTGLLGDARSPLPVKAGFLTGNPHRTESKQYTVT
KIICGGDHSFLLHSNDQSSVISEDFRVINVSKSIAPINYEQLNSWRLKLMYSTDSSVTND
IKIQLSSTACWNASFLDQSDDTHFKTNPKIPGIDLNSVRKLFEMLSKPAFSGLLEQASKS
FESLLIPQLQRSPPDVEAMRIYLILSEYPALFDSKNYIRLTIPLAMAILRLDANPSKVLG
IILAYNWWCFVDGGVFTRMVDMYKSIVVFLLTGGKTLLVPVCYENYFVATLRLLEKLHKV
NLKAHHVEYNRFYIPDITSLVDIQEDYLKWFLSKADIKQSSSPSQQGDVPSVNLCAYPFI
LNAQAKTTMLQTDAELQMQMAVSGANLHNVFMLLALEPHLARNPYLVLHVRRDHLVSDTL
RELTMYSDVDLKKPLKVIFDGEEAVDAGGVTKEFFLLLLKELMDPVYGMFTHYKESNLLW
FSDKCFVEQNWFHLIGIICGLAIYNSTVVDLHFPLVLYKKLLNVSPTLEDFKELSPTEAR
SLQQLLDYDGGDVEETFLLNFAITRENYGMTEVMELVPGGESISVDKNNRKEFVEAYLRY
VFSDSVSEQYSAFSSGFLKVCGGEILLLFQPSELMAMVVGNNNYNWEEMEKNAMYKGEYT
ATHPTVRLFWEVFHEFPLETKKQFLLFLTGSDRIPIHGMESLRIVIQSTTAEEHYLPVAH
TCYNLLDMPRYKTKETLHRRLTRAVEQYEGFSLV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctttgttgggggaatgcaaaagacggacagctgggtatcggcattgagaggaacccc
atgtttgagccgaggaactgtcatgtgttcactggcaggggactgaaagaaatagcttgt
ggagggcaacactcaatgttccttctgcatgatggtagtgtgtacacatgtggttctaac
agctgtggacagctgggccacagcaaaccagggactttcccagagctcgtaggagctctg
gacactcagacgataacaatggtgtcgagtggtcggtcccattcaatggcggtgaatgag
cagggtcaagtgtttgcgtggggggccggtgaagggggccagctcggtctggggactgca
gaggcggctgttcgaatcccgaggttggtcaaaaggctgtgtgagcagcggatctctcaa
gtaatgtgtgggaatcagcactgcattgcactttctaaagatggccagctgttcacgtgg
ggccagaacaccagcggccagctcggcctcgggaaaggagagcccagcaagcggttccct
catcccctgaagtctctgtcgggtattcccttggcacagataaccgccgggggagaccac
agctttgccctctccttgtccggagctgtctttggttggggcaagaacaaagctggacaa
cttggtctcaatgataaacaagatcgagctgttccgtgccacatcaaatttttgagatct
caaaaagtttgctatatcagctgtggaaatgaacatacagcagccctcacaaaggatggc
ggcttgttcacgtttggtgaaggctcgtggggtcagctgggtcatggctccacaaataat
gaacttttacccagacgagtgctggagctcatgggcactgaagtgtcccagatcacctgt
ggcaggcaccacacgttggcgtttgttccctcctccgatgtggtgtatgcatttggttgc
aacagccttggccagctgggcacaggactactgggggacgccaggagcccgcttcctgtg
aaggccggtttcctgactggaaatccacacagaaccgaatcaaaacaatatacagtgact
aaaatcatctgtggaggagatcatagcttcttattgcactctaatgaccagagttctgtc
atctccgaagacttcagagtgatcaatgtcagcaaatcaatcgccccaatcaattatgaa
caattaaattcatggaggttaaagctgatgtacagcacagattccagtgtcacaaatgac
attaaaatccaactctcctctacggcttgttggaacgccagctttttggaccaaagtgac
gatacccacttcaaaaccaacccaaagatcccaggcatcgatctcaactctgtcagaaag
ctatttgagatgctcagcaaaccggctttctctggacttctggaacaggcctccaagagc
tttgagagtctgttgatccctcagctgcagcgctcccctcctgacgtcgaggccatgagg
atctacctcatcttgtctgagtacccggccctgtttgactccaagaactacatccgcctc
actatcccccttgcaatggccatcctccggcttgatgccaaccccagcaaagtattgggt
atcatacttgcatacaactggtggtgttttgtcgacggcggcgtgttcaccagaatggtc
gacatgtacaaaagcatcgttgtgttcctgctaacgggaggcaagacgctgctcgtaccg
gtttgctacgagaactactttgtggccactctgaggctgctggagaaactccacaaggta
aacttaaaggcccaccatgtggagtacaaccgcttttatatccctgacatcaccagcctg
gtggacatccaggaagactacctcaaatggtttctgagtaaagctgacattaaacaatca
tcctccccttcacagcagggtgacgttccctcagtgaacctatgtgcctacccgttcata
ctgaacgctcaagccaagacaaccatgttgcaaacagacgctgaactgcaaatgcagatg
gcagtgagcggtgcaaacctacacaacgtcttcatgctgctcgcgctggagccccatctt
gcgaggaacccttacttggtgctgcatgtgcgcagggaccatttagtaagcgacacacta
cgagagctcaccatgtactctgatgtggacctcaagaaaccgctcaaggtgatttttgac
ggagaggaggccgtggatgcaggtggagtaactaaagagttcttcctgctactgttgaag
gagctgatggatcctgtgtatgggatgttcactcattacaaagagtccaaccttctgtgg
ttctcagacaaatgttttgtggagcagaactggtttcacctgatcgggatcatctgcggt
ctggccatctacaactccacagtggtggacctccacttccccctggttctctacaagaaa
ttgctcaatgtgtctccaaccctggaggacttcaaggagctgtcacccaccgaggcgcgg
agtctacaacaactgctagactacgacggaggtgatgtggaggagacgtttcttctcaac
tttgctatcaccagggagaactacgggatgacagaagtcatggagctcgttcctggagga
gaaagcatcagtgtggataaaaataacaggaaagagtttgtcgaggcgtacctgcgctac
gtgttctcagattctgtgagcgagcagtactcggccttctcctctggcttcctgaaagtg
tgcggtggggagatcctgctgctgttccagccgtctgagctgatggccatggtggtcggc
aacaacaactacaactgggaggagatggagaagaatgccatgtacaaaggggaatacaca
gccactcatccaacagtccgattgttctgggaggttttccacgagttccctctggaaacg
aagaagcagttcttattgttcctgaccggtagtgaccgaatccccatccatggcatggag
agcctgcgtatcgtcatccagtccactacggcggaggagcactacctaccggtggcccac
acctgctacaacctgctggacatgccccgctacaagaccaaagagaccctgcaccgccgt
ctcactcgggctgtagagcagtacgagggcttcagcctggtctga
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