Cyclopterus lumpus (lumpfish): 117728624
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Entry
117728624 CDS
T09199
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
117728624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117728624
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117728624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
PDZ_6
LIM
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117728624
NCBI-ProteinID:
XP_034385231
LinkDB
All DBs
Position
3:11308518..11333667
Genome browser
AA seq
1295 aa
AA seq
DB search
MEWRQQTSVSCGDAFNEARRWIEEVTVKSFGCNDFRAALENGVLLCDLINRLKPGIIRRV
NRLSTPIAGLDNVNVFLKACGKVGLNVSQLFHPGDLQDLSTRATLRRDESARRLKNVLIT
IYWLGRKAHLDSFYSGPQLNFKAFEGLLGLALSKALDEGGNVFAKECWYLEREECRRPSY
KAENIDSLDSRARRPNSEGCGSDAEAEQVFKMETTQPSTQQIKGSLPPRKQGQEEIGRSG
ASPLARAYQIQVRPERPVQVNPEWIWSKSLSDIPMAYPVRKVPDWSTIYDLKHDTDMTRE
CNLENKPRCSVAAKDSEAQWHDDLTKWKSRRRSTKSDRKLQDREHVNNQMADGAMITFEK
KEAQGRLLRDQQSPRRPYATPRPYSTSPPSKSLSAILRPHTRALLARSNATEAPFSPMSP
LSPHTLGSSVAAMPASDGNISGEETHSASLASDGAGVTTPSLDCPFSSQTHVKVQPRCSP
APLQPTTELAQPENGFTNVKKTNVTTKPTNTRDPVSLHQEPPFCVVPTLCLDAVHQAGAG
ALEDLPHKNHTSQEESQKTSWEAAMEQGRGQQVAVVYKYLSRAGSWSGSASLPRGYRRSE
GSSRLSSAVTARPFGTKQARVSSLPRLCNVDDNEGRLLKSGKRESFSPTSKSSLKRQTAM
THLKGQQQASIRQDANQAKQNGTVQVEEVKSATFSSQTDGDNYQPYSQTRLVPRPYSNLQ
TQRIKGSILPSKVDHSDMRVSLTLRPNSRPDFGFQTHWDSTGARVKCIQPGSPAELCQLC
VDDDIVAVNGVAVAHMNYNQWRDKMASSLHDGNLTMDIRRYGNKDWSTSEGSHHNQAGQS
RVTLNLTAAAPVLIGYPDHHANSGASAETTVRKVSKLNGQTDNVLQGKVTHGELADDHRT
ASKGGSESAISDLQVPSLSPSSSSWSWDHEEDRRHQKKWQEEQERLLQAQYLRNQERLES
EWQRAQQDSKRELCRKSGHLKQNTFEMTDDGESPASAQLYVNGLTNKTREEQSPNQDELE
EAGSKPQTNAQGEQHDKNSEQAWADDCCGFAKLSPAHRAKSLSTPALAGPHKLARGDEWK
RRGLSVSNAEKDRQQILEEMKKRTQLLTDNSWIRQRSSSSFYKAPIYVGVPMKRYESLDD
LDTLRQSPLSTATFSYPRPNSVAAGHCTPSRNSSSRYSTGSIISQKNVFDSPHHSGMVSG
KRTCCVCERVLGIGAAMVIETLGLCFHLACFQCVGCHRHLGRTETGVQVRIRNRKPHCEP
CYFQLKCEYWSLWVFFFLNQYNCFIVYFLAVKNVS
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgtcagcagaccagtgtgagctgtggagacgcgttcaacgaggctcgacgc
tggattgaggaagtgactgtaaaatcgtttggatgcaatgacttccgcgctgccctggag
aatggagtcctgctttgcgacttgatcaaccggttgaaacctggcattattaggagagta
aacaggctttctactcccattgctggcctggataacgtgaatgtattcctgaaagcctgt
gggaaagtgggactgaatgtgtctcagctgtttcacccaggagacctgcaggacctgtcc
actcgtgcaacacttaggcgagatgaaagcgccagaagactcaaaaatgttctcatcaca
atctactggctgggtcgcaaggctcaccttgactcattctacagtggtcctcagctaaac
ttcaaggctttcgaagggctgttagggttggccttgtccaaggcactagatgagggcggc
aatgtgtttgcaaaagagtgctggtacctagagagggaggaatgtcgccgcccgagctac
aaggccgagaacatcgactctctggattcccgagcccgccgcccaaacagtgaaggttgt
ggaagcgacgctgaagctgagcaggtgtttaagatggagacaacgcagccctccacccag
caaatcaaaggttctctcccaccgagaaaacaaggacaggaggagattggaaggagcggc
gctagtccgctcgccagagcgtatcaaatccaggtcagacctgagaggccagttcaggtc
aaccctgaatggatttggagcaaatcgctcagtgacatcccgatggcgtaccctgtgcgt
aaagttcctgactggagcaccatctatgatttgaagcacgacacggacatgacgagggag
tgcaacctggaaaacaaaccgaggtgtagcgttgctgccaaggacagtgaagctcagtgg
catgatgacttgacaaagtggaagagtcgtcgcaggagcaccaagtctgaccggaaattg
caagacagagagcatgtcaataaccagatggccgatggggccatgattacatttgagaag
aaagaagcacaaggccgactgctaagagaccagcagtcaccacgcaggccttacgctacc
cctcgtccttactccacctctcctccatccaaatcattgagcgctattctccggccacat
actcgggctctgctggcccgcagcaatgccacagaggcacctttcagccccatgtctcca
ctcagcccccacactctgggatcatcagttgcagccatgccggcatctgatgggaacatc
tcgggagaggagacccactctgcctccttggcttcagatggagcaggagttaccacccct
tctctggactgtcctttcagctcccagacccacgtcaaagtgcagcccaggtgcagccca
gctcctctccagcccacaacagaactagcacaaccagaaaacggttttacaaacgtgaaa
aagacaaatgtgaccacaaagccaaccaacaccagggatcccgtgtcgcttcaccaggaa
cctccattctgtgttgtccccactttgtgcctcgatgctgttcatcaggcaggagctggt
gctctggaggacttgccccacaagaaccacacgtcccaggaagagagccagaagacatct
tgggaagcagccatggagcaaggcagaggccagcaggttgcagtcgtctacaagtacttg
tccagagcaggatcgtggtccggctcagcaagccttccccgtggctaccggaggtccgag
ggttcatctcgtctctcttctgcagtcacagccagaccctttggaaccaagcaggccagg
gtgtcctcgctgccgaggctgtgcaacgtagacgacaacgagggtcggcttttgaaaagt
gggaaacgggagtctttctcgccaacatccaagtcttcactcaaaaggcagactgcgatg
actcatctgaaaggtcagcagcaggcctcaatcagacaggacgctaaccaggcaaagcag
aatggcacggtgcaggtcgaggaggtgaagagtgccacattctccagccagaccgatggc
gacaactatcagccctactcccagaccaggctagtaccgcggccgtattcaaacctgcag
acccagcgcatcaaaggctcgatcctcccatctaaggtggatcacagtgacatgagagtg
agccttacactcagacccaacagcagaccagactttggtttccagactcattgggactcc
acaggagcgagagtcaaatgtattcaacctggcagtccagcggagctctgccagctgtgt
gtcgacgatgacatcgtggctgttaatggagttgcggtggcacacatgaactacaaccag
tggagggataaaatggcatcttccttgcatgacggcaatctgaccatggacattcggcgc
tatggcaacaaggattggagcaccagtgaagggagtcatcacaaccaagcaggccagagc
agggtgaccctcaatctgacggccgcagcgcccgttctgataggttaccccgatcaccac
gccaacagtggggcctctgcagaaaccacagtcaggaaagtgtccaaattgaatgggcag
accgacaatgttttacaaggtaaagtcacgcatggagagcttgctgacgaccacaggaca
gccagtaaaggaggttcggaatctgctatatctgatctccaggtgccatccctcagcccc
tcctcctccagctggtcgtgggaccatgaggaggatcgaaggcatcagaagaagtggcag
gaagagcaggagcgcctcctacaggcacaatatctgcggaatcaggagaggcttgaatcg
gagtggcagagagctcaacaagattcaaagagggagttatgcaggaagtcagggcatttg
aagcagaacacttttgagatgaccgatgatggtgagagccctgccagcgcacagctgtat
gtgaatggattgacaaacaaaaccagagaggagcagagtcctaaccaagatgagctggaa
gaagcaggatcgaaacctcaaactaatgcacaaggagagcagcatgacaagaattctgaa
caagcctgggctgatgactgctgtggttttgcgaagctgtcgcctgcacacagggcaaag
tccttgtctaccccagcgttggccggcccccacaaactggcaagaggtgatgagtggaaa
agaagaggcctgtctgtgtctaacgctgagaaagacaggcagcagatattggaggagatg
aagaaaaggactcagcttctgaccgacaacagctggatacgtcagcgcagcagcagcagc
ttttacaaagccccaatctatgttggggttcctatgaagaggtacgagtccctggacgac
ctggatactttgcgtcagtcccctctctcgactgctacgttcagttaccctcgtccaaac
tctgttgctgcaggtcactgtaccccgagtaggaactcctcttcccgctacagcactgga
tcaataatatcccagaaaaatgtatttgactcccctcatcatagcgggatggtcagtggc
aagaggacttgctgtgtgtgtgagcgtgtcctgggtattggggcagccatggtcatagag
acccttggtctctgcttccacctcgcctgtttccagtgtgtgggctgccaccgacatctc
ggaagaactgagactggagtccaggttcgaattcgaaaccggaagccccactgtgagccc
tgctatttccaactcaagtgtgagtattggtcgttgtgggtttttttctttctgaatcaa
tacaattgttttatagtctatttccttgccgtgaaaaatgtatcctaa
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