Cyclopterus lumpus (lumpfish): 117728709
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Entry
117728709 CDS
T09199
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03022
Basal transcription factors
clum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117728709 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
117728709 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
clum03021
]
117728709 (ercc3)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117728709 (ercc3)
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117728709 (ercc3)
Transcription machinery [BR:
clum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117728709 (ercc3)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117728709 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
117728709
NCBI-ProteinID:
XP_034385393
Ensembl:
ENSCLMG00005004201
LinkDB
All DBs
Position
3:9393145..9401088
Genome browser
AA seq
780 aa
AA seq
DB search
MGKKDKGDRDKKSKKRFYEEEEEEEEVVGSESQQAIPAAAGKHVEESSTRLDEYGAKDYR
VQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFMVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDHVIRDCRLRTADGADTELITEVIQSKSLISKSIEEKGSTSTSQQPGDGQTS
SQPVPDDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQTEYPLLAEYDFRND
TVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDL
NFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVSIKTKKRILFYTMNPNK
FRACQFLIRFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEGDLMFSTKDEQQQLLQKVLAAS
DLDAEEELVAGEVGGRPQFSRRTGTMSSMSGADDTIYMEYRGSKAALGKGIHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaagataaaggagatcgggacaagaagtccaaaaagcgtttctatgaggag
gaagaagaggaagaagaggtcgtgggcagcgagtctcagcaggccatacctgctgctgca
ggaaaacatgtggaggagtccagtacaagactggatgagtatggtgccaaagactaccgt
gttcagatgctgttaaagaatgatcacacttcacgccctctttgggtggctccagatgga
catatcttcctggaagccttctcaccagtgtacaagtacgcccaggatttcatggtggcc
attgccgagccagtgtgcaggcctaaccatatccacgagtacaagctgacagcctattcc
ctgtacgcagcggtcagtgtggggctgcagacctctgatattgtagaatacctgcagaaa
ctcagcaagacgtctgtgccagatggaatcgtgcagttcattaagctctgcacagtaagc
tatggcaaagtcaagctggtgctcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcggcttctgcaggaccacgtgatccgtgattgtcgtctccgcactgca
gacggagcggacactgagcttattactgaagtcatccagagcaagtcattgatttccaag
tctattgaagaaaaggggagtacttctacctcacagcagcctggcgatgggcaaacttca
agccagccggtgcctgatgacatcttcagctactatgagcagatggataaagaagaagag
gaggaggaagagactcagactgtgtcttttgagatccgccaggagatgatcgaagagctg
cagaagcgttgtatccagacggagtaccccctcctagccgagtacgactttcgcaatgac
acggtcaacccagacatcaacatagacctgaagcccactgctgtgttgcggccctaccag
gaaaagagtttgcgcaagatgtttgggaatggacgcgctcgctctggggtcattgtgctg
ccctgcggagcgggcaaatccctggtgggcgtgacagcggcttgcacggtgcgtaaacgc
tgcctggtgctggggaactcctcggtgtcagtggagcagtggaaggctcagttcaagatg
tggtcgaccatcgatgactctcagatctgccgcttcacctcagacgccaaagacaagccc
atcggctgctcggtggccatcagcacctactccatgctgggccacaccaccaagcgttcc
tgggaggccgagagagtcatggagtggatgcggagccaggagtggggactcattatcctg
gatgaggtgcacactatccctgccaagatgtttcgtcgggttctgaccattgtccaggca
cattgcaaaatgggtctcactgccacactggtccgggaagacgacaagattgtggacctg
aatttcctaattgggcctaaactatttgaggccaactggatggaattgcagaacaatggc
tacattgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacagg
gagtacgtgtccatcaagacgaagaagcgcatcctgttttatacaatgaaccccaataag
ttccgcgcctgccagtttctcattcgcttccacgagcgtcgcaatgacaagattatggtc
ttcgctgacaacgtgtttgccttgaaggagtacgccattcgcctcaacaagccttacatc
tatggtccaacttctcagggcgaacgaatgcagattctacagaacttcaaacacaacccc
aagatcaataccattttcatctccaaggttggagacacctcgtttgacctgccagaagcc
aatgttctgatccagatctcctctcatggcggatcccgtagacaggaggcccagaggctt
ggcagagtcttacgagccaagaaaggaatggtagcagaggagtacaacgcatacttctac
tcactggtgtcccaggacacccaggagatggcttactccaccaagaggcagaggttcctg
gtggaccaaggttacagctttaaggtgatcacaaagttggctggtatggaggaaggggac
ctaatgttctccacgaaagatgagcaacagcagctgcttcagaaggttctagctgcttca
gacctcgacgctgaggaggaattggtggcaggggaggtgggcggacgaccacagttctcc
aggcgaacggggaccatgagctccatgtcaggtgcagatgacaccatctacatggaatat
cgaggcagcaaagccgcattaggcaagggcatccatcccctgttcaagcgcttcagaaag
tag
DBGET
integrated database retrieval system
