Cyclopterus lumpus (lumpfish): 117728713
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Entry
117728713 CDS
T09199
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
clum03041
]
117728713
Enzymes [BR:
clum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117728713
Spliceosome [BR:
clum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117728713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117728713
NCBI-ProteinID:
XP_034385402
Ensembl:
ENSCLMG00005002521
LinkDB
All DBs
Position
1:11724249..11732322
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AA seq
644 aa
AA seq
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MRGGSSYGDRGRDRPRFGAMNSRSGPPPMKFGNPGDRLRKKKWNLDELPKFEKNFYAEHP
EVQHMSQHEMEEFCRKKEITIRGTGCPKAIPAFHQAQFPQHVMDVLIQQNFKEPTAIQSQ
GFPVALSGRDMVGIAQTGSGKTLAYLLPSIVHINHQPYLERGDGPICLVLAPTRELAQQV
QQVAYEYGRSSRIKTTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCT
YLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKDVRQLAEDFLRDHVQINVG
ALELSANHNILQIVDVCMENEKDQKLFQLMEEIMAEKENKTIVFVETKKRCDDLTRRMRR
QGWPAMCIHGDKSQPERDWVLVEFRSGKAPILVATDVASRGLDVEDIKFVINYDYPNSSE
DYVHRIGRTARSSNKGTAYTFFTPGNLRQARDLVRVLAEARQAINPKLLQFVESGRGGGG
GGGRMRYRGSSSNNSNHMFQRQNDRSMHAGGGGGGGGGGSKDSRSSFGRDSHNNHDGGRS
TSSFRDRGRDQKNSHSAGSDQYQSYSSGGGGGFNSRNGGQDKSSQPQGQFSQPLPPPSLS
GGLQPLMTHQFAAQQQALMGFVGQPPYPFASPPPPPPGPPPPRK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgagagggggttcttcctacggcgaccgtggaagagacaggccacggtttggggccatg
aacagtcgcagtggacccccaccaatgaagtttgggaatccaggtgaccgtcttcgcaag
aagaaatggaacctagacgagcttccgaaatttgagaagaacttctatgctgaacaccct
gaagtccaacacatgagtcagcatgaaatggaagagttttgcagaaagaaggagatcacc
atcagaggcactggctgtccaaaggcgatccctgcctttcaccaggcgcagtttcctcag
catgtgatggatgtgctgatacagcagaacttcaaggagccaacagcaatccagtctcaa
ggcttccctgtggccctgagtggcagggacatggtggggatcgcacagactggctccgga
aagacactggcttatcttcttccttctattgtacacatcaaccaccagccctacctggag
aggggagacggcccaatttgtctagtgttggccccaaccagagagctggctcagcaggtt
caacaggtcgcatatgagtatggcaggtcttcccgtatcaaaaccacctgtgtctatggt
ggagcacccaaaggaccacagatccgagacctcgagaggggtgttgagatatgtatcgcc
acacctggtcgccttattgacttcctggagagtgggaaaactaacctgcggcgctgcacc
tacctggtgctggatgaggctgaccgcatgctggacatgggctttgaaccacagattcgc
aagattgttgaacaaatcaggcctgatagacagactctgatgtggagcgcaacctggccg
aaggatgttcgacagcttgcagaggacttcctgagggaccacgtccagattaacgttggt
gctctggagctcagtgccaaccacaacatcctgcagatagttgatgtctgcatggagaat
gaaaaggatcagaaactatttcagctgatggaggagataatggctgagaaagagaacaaa
accattgtctttgtggagacgaagaagcgctgtgatgatcttaccaggaggatgaggcgg
caaggatggccagcgatgtgtatccatggagacaagagccagccagaaagagattgggta
cttgttgaatttcggagtggtaaagctccaatactggttgctaccgatgtggcctcccgt
ggtctggatgtggaagacatcaagttcgtcatcaactatgactatcccaattcctctgag
gattatgtccaccgtattggacgtacggcccgcagttccaacaaggggacagcctacacc
ttcttcaccccagggaacctgcggcaggcacgagacctggtccgggtgctggcggaggcc
cggcaggccatcaaccctaaactgcttcagttcgtggagtcggggcgtggtggaggagga
ggcggtggcagaatgcgttaccgtggcagcagctccaacaactctaaccacatgttccag
aggcaaaatgatcgcagcatgcatgctggcggtggcggtggcggtggcggtggcggcagc
aaggacagccgcagtagcttcggccgtgacagccacaacaaccatgatggaggccgctcc
acttcctctttcagggacagaggccgagatcaaaagaatagccacagcgctggctcagat
cagtaccagagttacagtagcggcgggggcgggggcttcaactcccgcaacggaggtcag
gataagtccagccagccgcagggtcagtttagccagcctcttcctcccccttcattatca
ggggggttgcagcctctgatgactcatcagtttgctgcacagcagcaagcgctcatgggc
ttcgtggggcaaccgccgtacccttttgcttctccaccccctcctcctccaggccctcca
cctcccaggaagtag
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