Cyclopterus lumpus (lumpfish): 117728720
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Entry
117728720 CDS
T09199
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
clum
Cyclopterus lumpus (lumpfish)
Pathway
clum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
117728720 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
clum04121
]
117728720 (slx4)
03400 DNA repair and recombination proteins [BR:
clum03400
]
117728720 (slx4)
Ubiquitin system [BR:
clum04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
117728720 (slx4)
DNA repair and recombination proteins [BR:
clum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117728720 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
117728720
NCBI-ProteinID:
XP_034385413
LinkDB
All DBs
Position
1:complement(9564992..9575858)
Genome browser
AA seq
1764 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPGESRQPSDGDKRRRNHRRGGHGDSGSRTGADQHVVRG
GKQHDSGDAQSSSVPSAEPEPEPSGSLARDKVLHRMQQFKRAGPQRMVHKDEGHPANHEN
DGAPPLTQRHGTPHSSGSGLHPEPPDSDEALALRLQQELDREAAEAQTVDLEDRGLFFCQ
ICHRDLSRMTPEGRTQHLNRCLDESEGSAPAPPPPPPGVPGCPICGKKFKSQKSRSAHLK
RCSSDMGVAPAVLLQALQRQTEETQNVPTDYTLTQAGGTKRKGLSKPGLPVRKKPRKKTA
PLDDETMVALALSSSLLEQEQRGKKSETQSQTNAAASHISMTSALKRRPDTGKGRRKRKK
GAVPRPPPLLLVQDAEAALTRLQERVSALLPRSRAPSPPTPTRCPSSLPGWSGAAVLWQK
CTLLGGASASLSDFYTPELREFITPWESATTDAASSSTTNKPQSSGQLVSEGTPDPETRA
SMLPSSSQMSSSQTAFSTSRELLMDLMELAEDGVTLTQCGHTASGPDKDKSAGQITNLRL
SGFVLEESEEQADLCVSGFLPEPTHTHSEDARCRARRTMAQPGANERGGHHSVALSRLAS
DLSSMVNNPQLSDLQLQVDSGEVYFAHSFMLYARCPLLAEMVHESGFGVQEEGGPAVQRV
LMNDVPGQAVLALLQYLYTARCSIPASLRAHVLELASRFDLQELQLLCERHQQNPATQED
EEDHVNREENGNDQTDQAFAELLRSMWDGEDEDGWGPGVDGERHEERELEDHQAEDLASG
DREIREENVNEEELEEIYEFAATQRKREEDEDSTEEEKVDEEEDVLTKATEPQRSPSGLG
VKQLQPNSQLEPEPGLDLSYNRLFSDSWGVYEEADPSSLPSTSAPTKTHTPQYQQHQSPH
KPSSEPSLLRSSASVVDDLSLSPLANASSLPIPGQSPGPVSDWGDGGDEGTEDLALKGNG
HGPRNICVPLEKKEPELIVLSDSSEEMEVFLSSRSSSPHPSGAVQKPQSYTQLKPQPVPK
PDEPSTLQNKQSSSLESSPDDPSAAPVQSHLGPWCEQNPADCSPEVSWLIPSTPVQPGRS
TTTSSTQTKSSMCRTQLFPKGNNTSMSSVFSSPALPINNRAQTSNSPVGVAAHVGPTEGS
VPKLNLDETCHSSLDLNVCSQSPSSCGVSKDRGVCALPPCQPKLSCSKQDTRFHVQPHPY
SSTPLHTELHRAPALLATSPLHSDLDKSWTSLGKDRAPSESPEKTELGSFHLSPLSDRSH
PPSSSSDRALQGSQRQSESSRQSRRSVEFSSHNNTGSELKGRGLRNDKGEGERGGGKKDT
GDEGEQERAERGEADVAESSFAQSFVAMDEPPIAFSDSWGFDAVDLEANPGCFSLRLEDS
GASSQQGERGPGQRDAARSSSPTDHRPSPGSHSVHLLNSHVTASPPSKAHRSPPSTSVQA
HAGLSFTPSPPDPTNQTTPEIINSLLGSNIWDSWEEDEEEEAPPLSQRVNPCAQLKTPAP
LHNNRRRTLVPITPLPHYSDMDTPELKNKLNRFGVRPLPKRQMILKLKEIHQYTHQLVSS
EEEEEAPSASRTVPTKRPTTGSDVRGGRPASCTQRVKFKEPRGPAAISPLKPTREEEVEL
LSASQGSNTSSTAAIEESESRSNPELCLSSDSDSDGGISASQTANRHQDRLRAVRSFILS
DPQLYSQILQYRPLALSQLQERLKAAGIRLGAAKLLDYLDSQCITFTTAKPGHPAPARRR
GKRTGRGAKGDRGVGRKRPVTALI
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggactttgtggatctctgctcgaagctgctgaaacgagtccgc
aagaaaccgggtgagtccagacagccgagcgacggagacaagaggcggaggaaccacaga
agagggggacacggggactccgggtctcgtactggtgcagaccagcatgtggtccgtgga
gggaaacaacacgattcaggagatgcccagtcgtcctctgtgccctcagcagaaccagaa
ccagaaccgagcggctcgctggcgagagacaaagtcctccaccggatgcagcagttcaag
agagccggtccgcagaggatggtgcacaaggacgagggtcacccggcaaaccacgagaac
gatggcgctcctcctctgacacaaagacacggtacgccgcactcttccggttcaggtctc
cacccggagcccccggacagtgacgaggctctggccctgcggctgcagcaggagctggac
agggaggcagcagaggcccagacggtggacctggaggacagaggcctcttcttctgtcag
atctgccaccgagatctgtcacgtatgacacccgaggggcgaacgcagcatctcaacagg
tgtttggatgagagtgaagggagcgctccagccccccctccgccgcctcccggtgtcccc
ggctgtcccatctgtggcaagaagttcaagtctcagaagagtcgctcggcccacctgaag
cgctgctcctcagacatgggtgtcgctccggctgtgctgctgcaggctctgcagaggcag
actgaggaaacccaaaatgtccccactgattacaccctcacacaggctggtggcaccaaa
agaaaagggttgtccaagccgggcctgccggtgaggaagaagcccagaaagaagaccgcg
cccctggacgacgagaccatggtggccctggctttgtcctcctccctgctggaacaggag
cagcggggcaagaagtcagagacgcaatcccaaacgaacgctgctgcctctcacatctcc
atgacttcagcattgaagcggaggccagacacaggtaaggggcgtaggaagaggaaaaag
ggcgccgtgcctcgccctcctccactcctgctcgttcaggatgcagaggcggctctgacg
aggctgcaggagcgcgtctctgctctcctcccgcgcagccgcgccccctccccccccacc
ccgacccgctgccccagcagtctgcccggctggagcggtgctgccgtcctctggcagaag
tgtacactgctgggcggagcctccgcttctctgtctgatttctacactcccgagctcagg
gagttcatcacaccgtgggaatcggcaacgactgatgcagcctcctccagcaccaccaac
aagcctcagtcttctggccaactggtgagtgaaggaacccctgacccagagaccagggcc
tccatgctgccatcctcctcccagatgtcctcctctcagacggctttctccaccagccgg
gaactcctcatggacctgatggagctggctgaagatggcgtgaccctcacccagtgtggt
cacactgcttcaggccctgacaaagacaagagtgccggtcagatcacaaaccttcgcctg
agcggcttcgtcctggaggagtccgaggagcaggccgacctctgtgtgagcggcttccta
ccagaaccaacgcacacacattcagaggacgcccgctgccgagcgaggaggacgatggct
cagccgggggcaaatgagcgaggcggccaccactcggtggcgctatccagactggcctca
gacctgagcagcatggtcaacaaccctcagctcagtgacctgcagctccaggtggacagt
ggagaggtctactttgctcattccttcatgctgtatgctcgatgccccctgctggcagaa
atggtacatgaaagtggttttggggtgcaggaggaaggcgggcctgcagtccaaagagtg
ttgatgaatgacgtcccgggacaggcggtgttggccttgctgcagtatctctacacggcc
cgctgctccatcccagcatcgctacgggctcatgtgctggagctggcatctcggtttgac
ttgcaggagctacaattgctttgcgagcgtcaccaacagaacccagcgactcaggaggat
gaggaagaccacgtgaaccgggaggagaacggcaacgaccaaacggaccaggccttcgcg
gaactgctccgctccatgtgggacggagaggatgaagacggctggggcccaggtgtagat
ggagaaaggcacgaagagagagaattggaagatcatcaagccgaagaccttgcgtcaggg
gaccgggagatccgcgaagagaacgtgaacgaggaagagctcgaggagatctatgagttt
gccgccacgcagagaaagagggaggaggatgaagacagcacggaggaggagaaggtggac
gaggaagaagacgtgttaacaaaagcgacggaaccccaaagaagtccatcaggcctcggc
gtaaaacaactgcagccaaactctcaacttgagccggagcctggcctggatctcagctac
aaccgcctcttctcagactcctggggggtctacgaggaagcagacccttcctccttaccc
tccacttctgcccccactaagacgcacacccctcaataccagcaacaccagtcccctcat
aaaccctcatctgaaccctctttgcttcggtcctcagcaagcgtggttgacgacctttcc
ctcagccctttagcaaatgcgtccagcctgccgatcccgggtcagtctcctggtccagtg
agtgactggggtgacggtggagacgagggaacagaggatctggctttaaagggcaacggt
catggtcctcgtaacatttgtgtccctctggaaaagaaggaacctgagctcattgttttg
tctgactcaagcgaggagatggaggtatttcttagttcccgcagttcttcgccacatccc
tctggcgccgtccagaaaccgcagagctacacccagttaaaacctcagccagtcccgaaa
cctgatgaaccctccaccctgcagaataaacagtccagtagtttagagtcgagtcctgat
gatccatctgcggcgccagttcaaagtcatctaggtccctggtgtgagcagaatccagca
gactgttctccagaagtgtcctggctgatcccatccacaccggtccagcccggaagaagc
accacaaccagctccactcagactaaaagcagcatgtgccggacacagctgttccctaaa
ggcaacaacacttccatgtcctctgttttctcttcccctgctttacctattaacaacaga
gcgcaaacctccaacagtcctgtcggagtcgctgcccacgttggcccaacagagggcagt
gttcccaagttgaacctggatgagacttgtcactccagcttagacctcaacgtttgttct
caaagccccagtagttgtggtgtgagcaaggatcgaggcgtgtgtgcacttcccccgtgc
caacctaagctctcatgctcgaagcaggacacacgtttccacgtccagccccacccttac
agcagcactcccctgcacacagagctccacagggcccccgctcttcttgccacctccccg
ctacatagcgaccttgataagagttggacaagtctaggaaaggatagggcgccgtctgaa
agcccggagaagacagagttggggagctttcatctgtcacccctgtctgaccgctcccat
ccaccctcgtcttcctccgacagagctcttcaaggttcacagaggcagagtgaatcctct
cgtcaaagtcgtcgctctgttgagttcagcagtcacaacaacacagggtctgagctcaag
gggagaggattaagaaatgacaagggagaaggagagaggggaggtggaaagaaagacaca
ggtgatgaaggagagcaggagagagcagaaaggggagaggcagatgttgctgaatccagt
ttcgcacagagcttcgtggccatggacgagccccccatcgctttcagtgactcgtggggt
ttcgatgcagtagatttggaggcaaacccgggctgcttcagtctgaggctggaggacagc
ggagcatccagccagcaaggcgagcgtggcccgggacaacgagatgcagccaggtcgtcc
tcccctactgaccaccgaccttccccaggcagtcacagtgtccatttattgaacagccat
gtgactgcctcacctccatccaaagcccaccgctcacctccatccaccagtgtacaagct
catgcaggcctttcctttaccccttcacctcctgaccccacaaaccagaccactccagag
atcatcaacagcctcctgggctccaacatatgggacagctgggaggaagatgaagaggag
gaggctcctcctctctctcagagggtgaacccttgcgctcagctcaaaacaccagcacca
ttacataataaccggcgtcgcaccttggtgcccatcacccccttgccccactactctgac
atggacacaccggagctcaagaacaaactcaacaggtttggtgttcggcctttacccaag
cgccagatgatcctcaaactgaaggagatccaccagtacacccaccagctggtcagctct
gaggaagaggaggaggcaccgtctgcgagccgcacagttccgacgaagcgaccgaccacc
gggtcagacgttcgtggcggcagaccggcctcctgcacccagagagtgaagtttaaagag
cccagagggcccgctgccatctcccctctgaagcccaccagagaggaggaggtggagctg
ctttctgcctcgcagggctccaacacctcttcaactgctgccattgaagaatctgaaagc
aggtccaacccagagctgtgcctctcctccgactcagacagcgatggcggcatctctgcc
tcccagacagcaaaccgccaccaagaccgtctccgggcggtgcgctccttcatcctgtcc
gacccccaactgtacagtcagatcctgcagtaccggcctctggcgttgtcgcagctccag
gagcgactcaaagcggccgggatccgtctgggtgctgccaagttactggactacctggac
tcccagtgcatcaccttcaccacggccaagccgggccaccccgcccccgcccggaggcgg
ggcaagaggacaggcaggggggcaaagggtgaccggggagtgggccgcaaaagaccggtt
acagccctgatttaa
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integrated database retrieval system
