Cyclopterus lumpus (lumpfish): 117728755
Help
Entry
117728755 CDS
T09199
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
clum
Cyclopterus lumpus (lumpfish)
Brite
KEGG Orthology (KO) [BR:
clum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
clum04812
]
117728755 (katnb1)
Cytoskeleton proteins [BR:
clum04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
117728755 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
PROPPIN
Beta-prop_VPS8
RMC1_N
Beta-prop_NWD2_C
Beta-prop_LRRK2
Beta-prop_IFT122_2nd
WD_LRWD1
Ge1_WD40
Beta-prop_NUP159_NUP214
Cytochrom_D1
OYE-like_second_a-b
Motif
Other DBs
NCBI-GeneID:
117728755
NCBI-ProteinID:
XP_034385475
Ensembl:
ENSCLMG00005000188
LinkDB
All DBs
Position
3:31163083..31179548
Genome browser
AA seq
692 aa
AA seq
DB search
MAAANTTKISWRLQEFEAHSSPVSCLALGKSSGRLLATGGQDCRVNIWALSKANCIMSLT
GHKSPVECVQFNTSEEQVAAGSQSGSIRVWDLEAAKILRTLMGHKANITSLGFHPYGDFL
ASSSMDTNIKLWDVRRKGYVFRYKGHTQAVRSLAFSPDGKWLASASDDSTVKLWDLNQGK
MITEFKSHTAAVNIIQFHPNEYLLASGSSDRTIKLWDLEKFTMIGSLEADTTPVRSVFFS
SDGSCLYSGATDCLRIFGWEPDRCFDVVPVGWGKVSDLAVCNQQLIGVSHQLSSVSSYVV
DLKRVKKSGGSVIQGIIQDNQPLAEPKDPKGSALRRNYERPTTTCSSQRVKQSSDADRRS
PEGERRSPSEDEADEKVSSAEIHNAEDFKEIFQPKNAISRTPPRTSEPFPAPPEDDTILA
IGRQLKDMISAFPEKQQAPPLASSTPVQRVEPIVVSCEKRPAPPASAPPASAPHPQNLVT
AVKSKPKIIPSSRNEPIGLNVADFLPSSPNNRGGALSDEESLSQLKKGHDTMCVMLRSRH
KNLETVRSVWAREDIKSALAAAVSMNDLSIVVDILNIINLQPSLWKLDLCTTILPQIDQL
LHSKYESYIQTGCTSLKLIMKHFWMLISDTLKATPSVGVDITREERHQKCRACCKQLKNL
SHLVKNKAAQVGRHGSAFRELQLLMAPLDDSL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagccaacaccaccaagatctcatggagactgcaggagttcgaggctcactcc
agcccggtctcctgtttggctctggggaaaagctcgggccgcctgctggccacaggaggg
caggactgcagggtcaacatctgggccctcagcaaggccaactgcatcatgagtttgact
ggtcacaagagcccagtggagtgtgtccagttcaacacatcagaggagcaggtcgccgct
ggttctcagtccggatcgatacgagtctgggacctggaggctgccaagattttaaggact
ctgatggggcacaaagccaacatcaccagtctgggctttcatccatatggagacttcctg
gcctcgagctccatggacacaaacatcaagctgtgggacgtccggaggaaaggatatgtg
ttcaggtacaagggtcacactcaggcggtgaggagcctggccttcagtcctgatggaaag
tggttggcttcagccagtgacgactccactgtcaagctgtgggacctgaatcaggggaag
atgatcacagagtttaaatctcacactgcagccgtcaacatcatccagtttcatcccaac
gagtacctgctggcctcaggtagctccgacaggaccatcaagctgtgggacctggagaag
tttacaatgattggctcgttggaggcagacacaactccagtcaggtctgtgtttttcagc
tcggacggctcctgtctgtacagcggggccacagactgtctgcgcatctttggctgggag
cccgaccgctgcttcgatgtggtacctgtgggctgggggaaggtctccgacctggcggtc
tgcaaccagcagctgattggtgtgtctcaccagctctctagtgtgtcgtcctacgtggtt
gatctgaagcgggtgaagaagagcggtggctctgtgatccagggaatcatccaggacaac
cagccgctcgcagagcccaaagatcctaaaggatccgcattgcgcaggaactacgagaga
cccacaaccacctgcagctcacaaagggtgaagcagagttcagacgctgataggcggagc
cctgaaggtgagaggcggagccccagtgaggatgaggcggacgagaaagtatcgtcagct
gaaatccacaacgcagaagacttcaaagagatattccagccgaagaacgccatctctcga
actcctcccaggacatcggagccgtttcctgctcctccagaggacgacactatattagcc
atcggccgtcagctgaaggacatgatatctgcttttcctgagaagcagcaggctcctccc
ctggcctcctccacaccggtccagagggtggagcctatagtagtttcttgtgaaaagcgt
ccggcccccccagcctccgcccccccagcctccgccccccatcctcagaatctcgtcact
gcggtcaagtccaaacctaaaatcatcccgagctccaggaatgagcccatcgggctgaac
gtggccgacttcctgccgtcgtcccctaacaacaggggcggggctctgagtgatgaggag
tctctgtctcagctgaaaaagggtcatgacaccatgtgtgtgatgctgcgcagccggcac
aagaacctggagacggtccggtccgtgtgggccagggaggacatcaagagcgcgctggcc
gcggccgtctccatgaacgacctctctatcgtggtggacatcctgaacatcatcaacctg
cagccgtcgctatggaaacttgacctgtgcacaacgattcttccacagattgaccaactg
ctccacagtaaatatgagagctacatccagactggctgtacgtctctgaagctcatcatg
aaacatttctggatgctgatctccgacacgctgaaggcgacgccgtctgtgggcgtggac
atcacacgagaggagcggcaccagaagtgcagagcgtgctgtaagcagctgaagaacctg
agccacctggtgaagaacaaggcggcgcaggtcggtcgtcatggcagcgccttcagagag
ctgcagctgctcatggcgccgctcgacgactccctctga
DBGET
integrated database retrieval system
